Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30198
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 130 9e-31
02_05_0416 + 28791512-28792012 130 9e-31
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858... 31 0.73
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 30 1.3
09_02_0178 + 5399982-5400048,5400421-5400518 30 1.3
03_06_0776 - 36176390-36177589 29 3.0
09_03_0023 + 11617562-11617692,11617773-11617844,11620438-116205... 27 6.8
07_03_0313 + 16620817-16621515 27 6.8
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 27 6.8
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 6.8
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 27 6.8
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 27 9.0
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 27 9.0
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 9.0
>04_04_1026 + 30214437-30214937
Length = 166
Score = 130 bits (313), Expect = 9e-31
Identities = 61/84 (72%), Positives = 75/84 (89%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 DPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITVQLTV 182
DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV+LTV
Sbjct: 6 DPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV 65
Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254
QNRQA+++VVPSAAAL+I+ALKEP
Sbjct: 66 QNRQAKVSVVPSAAALVIKALKEP 89
Score = 104 bits (250), Expect = 4e-23
Identities = 49/73 (67%), Positives = 61/73 (83%)
Frame = +2
Query: 257 RDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPH 436
RDRKK KNIKH+GNISL+DVI IA+IMRNRSMA+ ++G+VKEILGT SVGCTV+G+ P
Sbjct: 91 RDRKKVKNIKHSGNISLDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPK 150
Query: 437 DLIDDINSGALTI 475
DL +I+ G + I
Sbjct: 151 DLQQEISDGEVEI 163
>02_05_0416 + 28791512-28792012
Length = 166
Score = 130 bits (313), Expect = 9e-31
Identities = 61/84 (72%), Positives = 75/84 (89%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 DPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITVQLTV 182
DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV+LTV
Sbjct: 6 DPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV 65
Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254
QNRQA+++VVPSAAAL+I+ALKEP
Sbjct: 66 QNRQAKVSVVPSAAALVIKALKEP 89
Score = 101 bits (241), Expect = 5e-22
Identities = 47/73 (64%), Positives = 60/73 (82%)
Frame = +2
Query: 257 RDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPH 436
RDRKK KNIKH+GNISL+DVI IA++MR RSMA+ ++G+VKEILGT SVGCTV+G+ P
Sbjct: 91 RDRKKVKNIKHSGNISLDDVIEIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPK 150
Query: 437 DLIDDINSGALTI 475
DL +I+ G + I
Sbjct: 151 DLQQEISDGEVEI 163
>11_04_0079 -
13284869-13284929,13285518-13285639,13285749-13285820,
13286048-13286200,13289510-13289709,13289745-13289947,
13289991-13290181
Length = 333
Score = 30.7 bits (66), Expect = 0.73
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 468 KAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 376
+APL S+RSCG L + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Frame = +3
Query: 42 VGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPSA 221
+GG G+ +LA G PK D K+ SD + L V + Q P +
Sbjct: 98 MGGGPGSWPALAESAAARGSWPKSASSDSLKSLSDGSAPSASEDLIVPSVQPHPVANPIS 157
Query: 222 AALIIRALKEP---LVIVKSRKISNTTATSPLR 311
+ P V+V S + NT ++P+R
Sbjct: 158 GGSNPTSSPPPPNATVVVTSEQNGNTDQSNPVR 190
>09_02_0178 + 5399982-5400048,5400421-5400518
Length = 54
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 317 LHPQGRCCRCV*YFSA--FYDHERLLKGSDDKGCCRGNN 207
+HPQG CRC YF + GSDD+ CC NN
Sbjct: 19 IHPQG--CRCC-YFRLRPMIQCAKACCGSDDENCCLVNN 54
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 272 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 361
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>09_03_0023 +
11617562-11617692,11617773-11617844,11620438-11620595,
11620677-11620939,11621041-11621167,11621748-11621816,
11621931-11622120,11622309-11622672
Length = 457
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 165 TVQLT-VQNRQAQIAVVPSAAALIIRALKEPLVIVKSRKISNTTATSPLRM 314
T LT +NR A +A+ +A L++ AL ++ K+++ NT+A +P R+
Sbjct: 79 TTSLTRSKNRAAILAISVAAPMLVVIALFVGYLMWKAKRKPNTSAYNPPRV 129
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 154 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 17
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = -1
Query: 481 FINGQSSAVDVINKIMWRPALHSTSN*LCCAKNLFY*ARKVPGH*SVSHDLRNSDYILKG 302
F++ + + ++N I++RPA+ S + +C A +F A + L+ S YI G
Sbjct: 412 FMSSIALIILLVNPILYRPAIRSYALSVCTAVGMF--ALMCAYAAGSTQHLKTSIYIF-G 468
Query: 301 DVAVVFDIFLLFTI 260
VA+V I +L I
Sbjct: 469 LVALVLFIMILVLI 482
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 30 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 131
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>02_05_0528 -
29782382-29782864,29782994-29783092,29783319-29783387,
29783781-29783888,29783965-29784274,29784772-29784812,
29784886-29784942,29785290-29785448,29785587-29785655,
29785728-29785877,29785967-29786098,29786347-29786433,
29786516-29786686,29786760-29786960,29787348-29787416,
29787510-29787618,29787887-29788005,29788676-29788780,
29789377-29789755,29790022-29790150,29790223-29790402,
29791310-29791469,29791604-29791744,29791832-29792021,
29792100-29792161,29792879-29793107
Length = 1335
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -1
Query: 103 DRPRGPILGAKDDVAPTSPPTHRKFTILISFGSN 2
D GP G DD + T P H + T I F N
Sbjct: 646 DEDSGPRPGTSDDSSATKPAEHNESTAEILFNPN 679
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 3 FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 116
F N +KIV ++C G EV +G G+ +K+
Sbjct: 375 FVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 233 DKGCCRGNNSYLGL-SVLNCQLHSD 162
D GCC SYLGL +L C++++D
Sbjct: 62 DCGCCYALPSYLGLFHILICKVYAD 86
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 141 LWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 34
+W C H P+ E D E R GP L R I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,445
Number of Sequences: 37544
Number of extensions: 327022
Number of successful extensions: 925
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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