Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30198
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 6e-37
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2) 30 1.3
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 29 2.3
SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 29 2.3
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.0
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 28 4.0
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3) 28 4.0
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1) 28 4.0
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 27 7.0
SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08) 27 7.0
SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10) 27 7.0
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 27 7.0
SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5) 27 7.0
SB_57193| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_21282| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23) 27 9.3
SB_14078| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 150 bits (364), Expect = 6e-37
Identities = 70/84 (83%), Positives = 79/84 (94%)
Frame = +3
Query: 3 FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTV 182
FDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV LT+
Sbjct: 5 FDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITVCLTI 64
Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254
QNRQA+++VVPSA++LII+ALKEP
Sbjct: 65 QNRQAKVSVVPSASSLIIKALKEP 88
Score = 120 bits (288), Expect = 9e-28
Identities = 54/75 (72%), Positives = 65/75 (86%)
Frame = +2
Query: 257 RDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPH 436
RDRKK KNIKHNGNI+L+DV +AK+MR RSMAR+LSG+VKEILGT QSVGCTV+G PH
Sbjct: 90 RDRKKVKNIKHNGNITLDDVTNVAKVMRPRSMARHLSGTVKEILGTCQSVGCTVDGMAPH 149
Query: 437 DLIDDINSGALTIDE 481
D+ID INSG + I++
Sbjct: 150 DVIDKINSGEIEIED 164
>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 671
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 63 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 233
T L P ++ PLGL PKK+ D ++ S KGL + +++++ + A + A +
Sbjct: 369 TPPLVPFRVSPLGLVPKKLPGDFRLSHHLSYPKGLSVNDGISLEHSTVRYATIGDAISK- 427
Query: 234 IRALKEPLVIVKSRKISNTTATSPLR 311
IRA + K+ I N P+R
Sbjct: 428 IRAAGRGCFLTKT-DIKNAFRIIPVR 452
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +3
Query: 63 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 233
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A +
Sbjct: 465 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISK- 523
Query: 234 IRALKEPLVIVKSRKISNTTATSPLR 311
IRA + K+ I N P+R
Sbjct: 524 IRAAGRGCFLTKT-DIKNAFRIIPVR 548
>SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +3
Query: 63 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 233
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A +
Sbjct: 48 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISK- 106
Query: 234 IRALKEPLVIVKSRKISNTTATSPLR 311
IRA + K+ I N P+R
Sbjct: 107 IRAAGRGCFLTKT-DIKNAFRIIPVR 131
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +3
Query: 63 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 233
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A +
Sbjct: 444 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISK- 502
Query: 234 IRALKEPLVIVKSRKISNTTATSPLR 311
IRA + K+ I N P+R
Sbjct: 503 IRAAGRGCFLTKT-DIKNAFRIIPVR 527
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 322 NCEDHEKQINGPVPFWLSKRDSWHSTVSWMYCGGQAA 432
N ++ + PVP + S R WHS SW G +A
Sbjct: 421 NASENNTVLFSPVPTFFSSR-GWHSLSSWRSAAGLSA 456
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 317 IGIAKIMRNRSMARYLSGS-VKEILGTAQSVGCTVEGRPP 433
+G K++++R G V+ + GT S+ C VEG PP
Sbjct: 128 VGTHKLLKSRDPVIVTIGDKVETLTGTEVSIICPVEGLPP 167
>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
Length = 193
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 392 TAQSVGCTVEGRPPHDLIDDINSG 463
T + C VE PPH++ D +N G
Sbjct: 150 TLNQLYCPVEPNPPHNMFDHVNLG 173
>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
Length = 2568
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +3
Query: 51 EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPS 218
E+G T + + LG PK V +D +DW + + IA+ PS
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDWVNNNLPENAITNSTWTGIALGPS 1848
>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 87 GPLGLSPKKVGDDIAKATSDWKG 155
GPLG+ +++ D ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -3
Query: 251 LLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITH 114
+ GSD+K CC G + LG+ + +HSD++ P+ L + H
Sbjct: 113 MFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLH 163
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -1
Query: 214 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 41
G IW T T+ L+ F +L +A + D+ +G I + +AP S
Sbjct: 271 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 330
Query: 40 HRKFTI 23
+ FT+
Sbjct: 331 KQDFTL 336
>SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
Length = 421
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 179 CQLHSDLETLPVTCGLGNVI 120
C++HS ET P+T + N+I
Sbjct: 118 CKIHSFFETFPITINIANLI 137
>SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 154 PFQSLVALAMSS--PTFLGDRPRGPILGAKDDVAPTSP 47
PF +L+ SS F+ DRPRGP G D + P
Sbjct: 360 PFNALIVGPTSSGKTRFIVDRPRGPFRGKFDYIVLVCP 397
>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
Length = 291
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -1
Query: 214 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 41
G IW T T+ L+ F +L +A + D+ +G I + +AP S
Sbjct: 109 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 168
Query: 40 HRKFTI 23
+ FT+
Sbjct: 169 KQDFTL 174
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 9 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 119
P+ +L+C G E TSS+ P +G LG K G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632
>SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)
Length = 386
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 63 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 233
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A + I
Sbjct: 263 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 322
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 15 EIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQN 188
E V +G + + + PLGL PKK+ D + S KGL + +++++
Sbjct: 306 EHSTVRYATIGDAISKIRAAGRGVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEH 365
Query: 189 RQAQIAVVPSAAALI 233
+ A + A + I
Sbjct: 366 STVRYATIGDAISKI 380
>SB_57193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 504 YIDIRNIYSSMVKAPLLMSSIRS 436
Y+D+ + YS++VKAP L+ R+
Sbjct: 25 YVDLADSYSTIVKAPSLLQPART 47
>SB_21282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 84 IGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPL 257
+ PLGL PKK+ D + S KGL + +++++ + A + A + IRA
Sbjct: 2 VSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISK-IRAAGRGC 60
Query: 258 VIVKSRKISNTTATSPLR 311
+ K+ I N P+R
Sbjct: 61 FLTKT-DIKNAFRIIPVR 77
>SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23)
Length = 313
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 257 RDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPH 436
R K+ I + +++ + +A + +++ L + +GT VG TVEG P H
Sbjct: 104 RTLKEGTPIAFDTDVNAPALAEMAAALNTKTIPIPLPTVIYITVGTGVGVGVTVEGSPVH 163
Query: 437 DLI 445
L+
Sbjct: 164 GLL 166
>SB_14078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 84 IGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPL 257
+ PLGL PKK+ D + S KGL + +++++ + A + A + IRA
Sbjct: 2 VSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISK-IRAAGRGC 60
Query: 258 VIVKSRKISNTTATSPLR 311
+ K+ I N P+R
Sbjct: 61 FLTKT-DIKNAFRIIPVR 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,148,613
Number of Sequences: 59808
Number of extensions: 355749
Number of successful extensions: 879
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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