Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30198
(520 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 128 3e-30
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 128 3e-30
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 128 3e-30
At4g31260.1 68417.m04437 hypothetical protein 30 1.1
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 30 1.1
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 29 1.9
At2g16270.1 68415.m01863 expressed protein and genefinder; expr... 29 2.5
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 28 4.3
At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ... 27 5.7
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 7.6
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 7.6
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 128 bits (308), Expect = 3e-30
Identities = 60/84 (71%), Positives = 75/84 (89%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 DPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITVQLTV 182
DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++TV+LTV
Sbjct: 6 DPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTV 65
Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254
QNRQA++ VVPSAAAL+I+ALKEP
Sbjct: 66 QNRQAKVTVVPSAAALVIKALKEP 89
Score = 107 bits (258), Expect = 3e-24
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = +2
Query: 257 RDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPH 436
RDRKK KNIKHNGNIS +DVI IAKIMR RS+A+ LSG+VKEILGT SVGCTV+G+ P
Sbjct: 91 RDRKKVKNIKHNGNISFDDVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPK 150
Query: 437 DLIDDINSGALTI 475
DL ++INSG + I
Sbjct: 151 DLQEEINSGDIDI 163
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 128 bits (308), Expect = 3e-30
Identities = 60/84 (71%), Positives = 75/84 (89%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 DPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITVQLTV 182
DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++TV+LTV
Sbjct: 6 DPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTV 65
Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254
QNRQA++ VVPSAAAL+I+ALKEP
Sbjct: 66 QNRQAKVTVVPSAAALVIKALKEP 89
Score = 100 bits (240), Expect = 5e-22
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +2
Query: 257 RDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPH 436
RDRKK KNIKHNGNIS +DV IA+IMR RS+A+ LSG+V+EILGT SVGCTV+G+ P
Sbjct: 91 RDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPK 150
Query: 437 DLIDDINSGALTIDE 481
DL +I G + I E
Sbjct: 151 DLQQEIQEGEIEIPE 165
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 128 bits (308), Expect = 3e-30
Identities = 60/84 (71%), Positives = 75/84 (89%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 DPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITVQLTV 182
DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++TV+LTV
Sbjct: 6 DPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTV 65
Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254
QNRQA++ VVPSAAAL+I+ALKEP
Sbjct: 66 QNRQAKVTVVPSAAALVIKALKEP 89
Score = 99.5 bits (237), Expect = 1e-21
Identities = 47/75 (62%), Positives = 58/75 (77%)
Frame = +2
Query: 257 RDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPH 436
RDRKK KNIKHNGNIS +DV IA+IMR RS+A+ LSG+V+EILGT SVGCTV+G+ P
Sbjct: 91 RDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPK 150
Query: 437 DLIDDINSGALTIDE 481
D+ +I G + I E
Sbjct: 151 DIQQEIQDGEVEIPE 165
>At4g31260.1 68417.m04437 hypothetical protein
Length = 63
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -2
Query: 495 IRNIYSSMVKAPLLMSSIRSCGGLPSTV 412
IR++Y VK+ + + IRSCGG+ ++V
Sbjct: 28 IRSLYPDKVKSEIPIQDIRSCGGVLASV 55
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = -2
Query: 456 LMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPITSSREMLPLCLIF 277
+ +I CGG+PS + C+V P R+ ++ + I + ++ +L LC+++
Sbjct: 622 VFGNINLCGGIPS-LQLQPCSVEL-----PRRHSSVRKIITICVSAVMAALLLLCLCVVY 675
Query: 276 FCFLRSR 256
C+ + R
Sbjct: 676 LCWYKLR 682
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -2
Query: 333 IFAIPITSSREMLPLCLIFFCFL 265
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At2g16270.1 68415.m01863 expressed protein and genefinder;
expression supported by MPSS
Length = 759
Score = 28.7 bits (61), Expect = 2.5
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +3
Query: 51 EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAAL 230
EVG+ + LA G S + G+ IA TSD LK+ N ++ +V S+ L
Sbjct: 554 EVGSYNDLAKGDAESG-SEEGFGE-IAAETSDDLHLKVRSSNKAYNDSTKLMIVLSSTVL 611
Query: 231 IIRALKEPLVIVKSRKISNTTATSP 305
++ A+ V K K+ T +P
Sbjct: 612 VLLAVAS-FVFAKKTKLVAATKPAP 635
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 27.9 bits (59), Expect = 4.3
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +3
Query: 48 GEVGATSSLAPKIGPLGLSPKKVG-DDIAKATSDWKGLKITVQLTVQNRQAQIAVVPSAA 224
GE+ SSL P G P VG DDIA S W G+ + Q+T R +++
Sbjct: 570 GELVEESSLPPAAGDD--EPILVGPDDIAAVASVWSGIPVQ-QITADERMLLMSLEDQLR 626
Query: 225 ALIIRALKEPLVIVKSRKISNTTATSPLR 311
++ + I ++ K S P R
Sbjct: 627 GRVVGQDEAVAAISRAVKRSRVGLKDPDR 655
>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
ADP, ATP translocase 1 / adenine nucleotide translocase
1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
carrier protein 1, chloroplast precursor (ADP/ATP
translocase 1) (Adenine nucleotide translocase 1)
{Arabidopsis thaliana}
Length = 624
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 333 IFAIPITSSREMLPLCLIFFCFL 265
IF + + + ++++PL L+FFC L
Sbjct: 105 IFGVEVATLKKIIPLGLMFFCIL 127
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 48 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 146
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 48 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 146
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,124
Number of Sequences: 28952
Number of extensions: 251762
Number of successful extensions: 720
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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