Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30196X
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 32 0.31
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 30 0.94
11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887 30 1.2
03_05_0286 + 22750132-22750630,22750892-22750923,22751121-227512... 30 1.2
05_03_0665 - 16774043-16774522 29 2.2
03_05_0298 - 22873933-22874040,22874807-22875407,22875517-228755... 29 2.2
03_05_0060 + 20363857-20365359 29 2.9
03_01_0248 - 1932992-1933423,1933440-1933489,1933558-1933606,193... 29 2.9
06_03_0729 + 23927656-23927661,23927774-23927923,23928316-239285... 28 3.8
04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740 28 3.8
02_05_0240 - 27110752-27111180 28 5.0
11_01_0353 - 2648496-2649224 27 6.6
04_04_1322 + 32640414-32642327 27 6.6
01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028 27 6.6
12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912... 27 8.8
07_01_0468 + 3537669-3537890,3539003-3539130,3539398-3539621,353... 27 8.8
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 27 8.8
03_06_0246 + 32622793-32622804,32622883-32623057,32623395-326236... 27 8.8
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296 27 8.8
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 31.9 bits (69), Expect = 0.31
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 111 PRKSEVVRIHRRGIAHPPERGADRGPHVERVRVPHRQGRGLGREEHR 251
PR R HR AHP G D V + H +G+ REEH+
Sbjct: 541 PRAPSSHRKHRSRSAHPRSGGRDDEERVMDKLLMHYSKKGIDREEHK 587
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 351 ESPVDLTPNVGVACLPPPMDSPAAKTKCLATGWGKDNFGKEGRHRGI 491
+ P+D TPN+ + P D AAK LA + K G RG+
Sbjct: 1714 QKPIDATPNLPTSA---PKDKAAAKAAALAAARDLERSAKIGSRRGL 1757
>11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887
Length = 372
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 88 TELRFPDDPESQKLYVYIGGGSLIHPSVVLTAGHMLNESVSLTARVGD 231
T R D YV+ G G +H VVL AG + + V+ R+GD
Sbjct: 277 TRARPSDHHNPDNTYVFAGDGRELHEIVVLAAGELEHRFVA-AVRLGD 323
>03_05_0286 +
22750132-22750630,22750892-22750923,22751121-22751256,
22751909-22751913
Length = 223
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 22 AYQSEEGFSKFG-EIPWMAVILRTELRFPDDPESQKLYVYIGGGSLIHPSVVLTAGHMLN 198
AY ++E +F +I + ++R + +D + K Y Y+ G + +LT+ H++
Sbjct: 3 AYLNQEQRQQFSKQISSVVWMIRVDSAAKEDDLATKDYAYVAGVCMSPVGHILTSAHVVK 62
Query: 199 ESVSLTARVGDWDA 240
V W A
Sbjct: 63 PGVKYVGACTSWKA 76
>05_03_0665 - 16774043-16774522
Length = 159
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -2
Query: 487 PRCLPSFPKLSLPQPVARHLVLAAGESMGGGKQATPTLGVRSTGD---SRKSRAPSYKNF 317
P LP P+L+LP P R G GGG + G+ D R+ R SYK +
Sbjct: 72 PPPLPPPPRLALPPPPGRRDGYLGGGGAGGGGGGGGSGGMWCFSDPEMKRRRRVASYKAY 131
>03_05_0298 -
22873933-22874040,22874807-22875407,22875517-22875596,
22875685-22875816
Length = 306
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +3
Query: 159 PPERGADRGPHVERVRVPHRQGRGLGRE 242
P ERG RG R R P R GRG G E
Sbjct: 233 PEERGRHRGSRGRRPRRPCRAGRGGGGE 260
>03_05_0060 + 20363857-20365359
Length = 500
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 199 ESVSLTARVG-DWDARNIEECSPTRTE 276
E+V A +G DW +N+++CS T TE
Sbjct: 292 ENVGTVAAIGQDWTVKNMDKCSITYTE 318
>03_01_0248 -
1932992-1933423,1933440-1933489,1933558-1933606,
1933688-1933840
Length = 227
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 371 SQRGRRLLAAAHGLSRCQDQVPRHRLGQGQLREGRETPGHHE 496
S+RGR+L ++R DQ+ + + ++ RE PG E
Sbjct: 186 SERGRKLFTGRKNVARWYDQISKRETWKQVVKMQREHPGAFE 227
>06_03_0729 +
23927656-23927661,23927774-23927923,23928316-23928567,
23929072-23929209,23931213-23932730
Length = 687
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 348 LESPVDLTPNVGVACLPPPMDSPAAKTKCLATGWGKDNFGKEGRHRGIMKKI 503
L P P+ PPP SPAA +C ++G G + G G+++ +
Sbjct: 200 LNPPSSDAPSPPPPSPPPPPPSPAAHRRCSSSGGGGGDDDGYGGGDGMLRSL 251
>04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740
Length = 326
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 240 EEHRGVFTHQDRNVKSFIIHEQFNRRKFLYDGALLFLESPVD--LTPNVG 383
EE+ GV H+D N +F++ + + L DGA + ++ PV+ + N+G
Sbjct: 187 EENNGVSEHEDGNCITFVLQDGVGGLEVLKDGAWVPVD-PVEGSIIVNIG 235
>02_05_0240 - 27110752-27111180
Length = 142
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 463 KLSLPQPVARHLVLAAGESMGGGKQATPTLGVRSTGDSRKSRA 335
K+ + + +H+V A G GGG V + G+ + RA
Sbjct: 51 KIVVSKRELKHMVAALGSGTGGGGAVAAAAAVTAAGERHRQRA 93
>11_01_0353 - 2648496-2649224
Length = 242
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 151 SLIHPSVVLTA-GHMLNESVSLTARVGDWDARNIEECSPTRTETSRASSYTNSLTEGNFY 327
S I PS + +A +V++ ARVG +++ + SP +S +++ +S + Y
Sbjct: 47 SFIWPSSMSSACKQAAAAAVAVPARVGGGGSKS--KSSPYYFRSSSSAASFSSSSAATTY 104
Query: 328 TTALYFSLSR 357
+TA Y+S SR
Sbjct: 105 STASYYSSSR 114
>04_04_1322 + 32640414-32642327
Length = 637
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 377 RGRRLLAAAHGLSRCQDQVPRHRLGQGQLR 466
RGR L AAHG QVP +G +R
Sbjct: 500 RGRSGLCAAHGTLMASKQVPESEHSRGMIR 529
>01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028
Length = 444
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 323 FIRRRSTFP*VAR*SDSQRGRRLLAAA-HGLSRCQDQVPR 439
FIRR S P R S S GR L AAA GLS ++PR
Sbjct: 81 FIRRLSFAPQTRRFSSSAFGRLLDAAADRGLSELAVRLPR 120
>12_02_0928 +
24488891-24489675,24490369-24490421,24490479-24491229,
24491322-24491533,24491780-24492570,24492686-24492784
Length = 896
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 70 MAVILRTELRFPDDPESQKLYVYIGGG 150
MAV + EL FPDD E + + +GGG
Sbjct: 191 MAVGMEVELPFPDDEEDESM---VGGG 214
>07_01_0468 +
3537669-3537890,3539003-3539130,3539398-3539621,
3539660-3540062,3540398-3540473
Length = 350
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 466 PKLSLPQPVARHLVLAAGESMGGGKQAT 383
P L LP PVA +V+AA ++GG + T
Sbjct: 299 PLLHLPAPVAVVVVVAAAANVGGERGCT 326
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 93 APIP*RPRKSEVVRIHRRGIAHPPERGADRGPHV 194
AP P P + HR GI HP R + PHV
Sbjct: 45 APAP-APAPAPAPETHRPGIRHPVPRHHRKRPHV 77
>03_06_0246 +
32622793-32622804,32622883-32623057,32623395-32623659,
32624594-32624693,32625076-32625125,32625239-32625293,
32625742-32625774
Length = 229
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +1
Query: 67 WMAVILRTELRFPDDPESQKLYVYIGGGSLIHPSVVLTAGHMLNESVSLTARVGDWDARN 246
W A+++ L P L+V + L P + GH L E S+ G D++
Sbjct: 152 WKAILVYENLSNPYGIAGTLLHVQVSQSYLPKPKFIFNGGHELWEWRSICG-CGHMDSQP 210
Query: 247 IEECSPTRTE 276
+ + + TRTE
Sbjct: 211 LND-TTTRTE 219
>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
Length = 416
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 387 ACLPPPMDSPAAKTKCLATGWGKDN 461
A + PP+ SP A+T + T W + N
Sbjct: 243 APVTPPLSSPTARTPRMKTDWDESN 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,407
Number of Sequences: 37544
Number of extensions: 349600
Number of successful extensions: 1233
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -