Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30196X
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    31   0.49 
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co...    29   2.0  
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL033510-2|CAA22065.1|  281|Caenorhabditis elegans Hypothetical ...    27   7.9  
AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5 prot...    27   7.9  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   7.9  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = +3

Query: 177 DRGPHVERVRVP-HRQGRGLGREEHRGVFTHQDRNVKSFIIHEQFNRR-KFLYDGALLFL 350
           DR P    VRV  HR G G     HR         V +  IH  +N      YD A++ +
Sbjct: 104 DRRPTSYSVRVGGHRSGSG---SPHR---------VTAVSIHPWYNIGFPSSYDFAIMRI 151

Query: 351 ESPVDLTPNVGVACLPPPMDSPAAKTK-CLATGWG 452
             PV+ +      CLP     PA + + C+ TGWG
Sbjct: 152 HPPVNTSTTARPICLP---SLPAVENRLCVVTGWG 183



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 145 GGSLIHPSVVLTAGHML---NESVSLTARVG 228
           GGSLI P+ VLTA H         S + RVG
Sbjct: 85  GGSLIDPNFVLTAAHCFAKDRRPTSYSVRVG 115


>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
           complex protein protein15 protein.
          Length = 1127

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +1

Query: 169 VVLTAGHMLNESVSLTARVGDWDARNIEECSPTRTETSRASSYTNSLTEGN-FYTTALY- 342
           VV +A   +NE  +L +++ D    N+  C P  T  S+ +  T+ +   N ++  +LY 
Sbjct: 323 VVWSARVPMNEHRALFSKIDDSIYSNLTLCIPKNTAESKKADRTDGIIIINPYFAVSLYL 382

Query: 343 -FSLSRP 360
            F L++P
Sbjct: 383 PFDLAKP 389


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 315 RKFLYDGALLFLESPVDLTPNVGVACLPPPMDSPAAK-TKCLATGWGKD 458
           R+   D A+  LE P++ + ++  ACLP     P  + T     G+G+D
Sbjct: 117 RESFNDIAVFELEEPIEFSKDIFPACLPSAPKIPRIRETGYKLFGYGRD 165


>AL033510-2|CAA22065.1|  281|Caenorhabditis elegans Hypothetical
           protein Y40H7A.2 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 120 TFGVVRES--ELSSQNDSHPGYFTELAEAFLAL 28
           T   +RES  E+S QN+SH  Y T   EAF  L
Sbjct: 64  TVDKIRESILEMSKQNESHKFYETLRPEAFCPL 96


>AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5
           protein.
          Length = 738

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 294 IHEQFNRRKFLYDGALLFLESPVDLTPNVGV 386
           +HE FN RKF+   ++LF    +  +P + +
Sbjct: 509 VHEWFNNRKFVDSVSILFSGKYLGFSPKIAI 539


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 302 FVYDEALDVSVLVGEHSSMFLASQSPTLAVRDT 204
           FV+      ++L+ ++ ++ LAS++PT+  R T
Sbjct: 189 FVFQPGQPDNILLNQNCALLLASRTPTITARGT 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,493
Number of Sequences: 27780
Number of extensions: 244621
Number of successful extensions: 856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)