Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30196X
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.34 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 330 DGALLFLESPVDLTPNVGVACLPPP--MDSPAAKTKCLATGWGKDNF 464
           D ALL  E  +     VG ACLP    +DS  A +     GWG  +F
Sbjct: 257 DIALLKTEKDIKFGDKVGPACLPFQHFLDS-FAGSDVTVLGWGHTSF 302


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 101 NRSSVRKMTAIQGISPNLLKPS 36
           NR  + ++ +   ISPN LKP+
Sbjct: 462 NRKQISELESNMQISPNELKPN 483


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 18  DSVPKRGRLQQVR*NTLDGCHFAN*APIP*RPRKSEVVRIHR 143
           +S  K G L  V    LD  H+     +   PR+ E + +HR
Sbjct: 694 ESDDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHR 735


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 384 VACLPPPMDSPAAK 425
           VAC PPP  +P ++
Sbjct: 390 VACSPPPRQTPPSR 403


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 393 LPPPMDSPAAKTKCLATGWGKD 458
           LP PMD P A  + +   W K+
Sbjct: 857 LPAPMDCPEAIYQLMLDCWQKE 878


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 437 RHRLGQGQLREGRETPGHH 493
           R R G+G+ RE R  P H+
Sbjct: 316 RDRRGRGRSREHRIIPSHY 334


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 252 GVFTHQDRNVKSFIIHEQFNRRKFLYDGALLFLESPVDLTPN 377
           G  +HQ+ NV   +     + R+   +G     E P+D++ N
Sbjct: 230 GPESHQNSNVPKSVAGLNVSSRRSDMNGTTPLDEKPLDVSSN 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,191
Number of Sequences: 438
Number of extensions: 3249
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)