Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30195
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 56 4e-08
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 54 1e-07
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 51 1e-06
11_01_0767 + 6438648-6438809,6439146-6440000 48 5e-06
11_02_0012 - 7346282-7347136,7347234-7347593 48 7e-06
11_02_0011 - 7337618-7338496,7338596-7338991 48 1e-05
11_02_0014 - 7352619-7352918,7353173-7353418 44 2e-04
01_01_1152 + 9170628-9171899 44 2e-04
11_01_0771 + 6453130-6454488 41 8e-04
04_04_0619 + 26652923-26653267,26653440-26654273 41 8e-04
05_06_0044 - 25150322-25151260 41 0.001
11_01_0750 - 6315126-6315896,6316371-6316784 38 0.006
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 4.7
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 29 4.7
10_07_0145 - 13381172-13381334,13381468-13381665,13381753-133819... 28 6.2
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 28 8.3
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 28 8.3
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 8.3
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = +3
Query: 519 DSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMMYKRGDYKY 686
D++ AT AVL NA+YFKG W SKFD R TSD FY+ + P M G ++Y
Sbjct: 164 DAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFM-SSGKWQY 218
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 319 GVELKMANKVYVHDGGKLGENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNN 495
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E T
Sbjct: 96 GPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATAG 155
Query: 496 RIKD 507
RIKD
Sbjct: 156 RIKD 159
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 507 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMM 662
++ P S+ T VL NA+YFKGAW+ KFD T D +F++ K+++ P M
Sbjct: 232 ILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKSVQAPFM 283
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +3
Query: 507 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMMYKR 671
+ P S++ T VL NA+YFKGAW+ KFD T D +F++ ++++ P M R
Sbjct: 484 IATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGESVQAPFMSTR 538
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +3
Query: 507 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMM 662
++ P S+ T VL NA+YFKGAW+ KFD T D +F + K++ P M
Sbjct: 24 ILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGKSVLAPFM 75
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 507 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMMYK-RGDYK 683
++ P+S S T V+ NAIYFKG W + FD+ T++R+F +++VP M + G Y
Sbjct: 77 VIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREFRRLDGSSVEVPFMQRPSGSYH 136
Query: 684 Y 686
+
Sbjct: 137 H 137
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 516 PD-SLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMMYKRGDYKYG 689
PD S+ TA VLVNAIYFKG WS+ F T+ F+ ++ P M R D G
Sbjct: 145 PDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSREDQYIG 203
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 516 PD-SLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMMYKRGDYKYG 689
PD S+ TA VLVNAIYFKG WS+ F T+ F+ ++ VP M R D G
Sbjct: 157 PDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMSSREDQYIG 215
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 516 PD-SLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMMYKRGDYKYG 689
PD S+ T VLVNAIYFKG WS F T+ F+ ++ V M R D G
Sbjct: 107 PDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLDGSSVNVRFMRSREDQYIG 165
>01_01_1152 + 9170628-9171899
Length = 423
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 516 PDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMM 662
P+S+ S+T VL NA++FKG WS F T F++ ++ P M
Sbjct: 181 PNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGGAVRAPFM 229
>11_01_0771 + 6453130-6454488
Length = 452
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +3
Query: 516 PDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFY 626
P S+ TA VL NAIYFKG W F+E T + FY
Sbjct: 195 PRSVGPETAVVLGNAIYFKGKWDRPFNESDTERKPFY 231
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 510 VNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMM 662
++P + S+T VL NA++FK W KF+ T R F+ + VP +
Sbjct: 139 ISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQDGTRVTVPFL 189
>05_06_0044 - 25150322-25151260
Length = 312
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 534 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMM 662
+ + L N++YF W F LT + DF+VS D ++VP M
Sbjct: 75 SASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +3
Query: 507 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMM 662
L+ ++ T VL +A+YF+G W + D R T+++ FY +++VP +
Sbjct: 161 LLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPFV 212
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 277 TEFASKSRDLRSIKGVELKMANKVYVHDG 363
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>02_05_0232 +
27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 374 PSFPPS*TYTLFAILSSTPLIDR-RSRLLLANSVRIASSSGS 252
P+ PPS +T+ + LSS+ + R RS L + +SSSGS
Sbjct: 222 PAIPPSPAHTVASTLSSSSISSRMRSMSLHPSESEASSSSGS 263
>10_07_0145 -
13381172-13381334,13381468-13381665,13381753-13381952,
13382036-13382149,13382255-13382391,13382501-13382611,
13383793-13384060,13385034-13385132,13385277-13385471
Length = 494
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 701 VCALSIFIIAAFIHHGYFDCFVLAHVEVTVTGQSLVKFRTPCS 573
+CA F++ +H Y+ L V TV G V RTPCS
Sbjct: 455 ICASYDFVLG---NHKYYIYIYLQAVAFTVMGFGFVGTRTPCS 494
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 124 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 20
K GC+ + + + GCHC DG + + +DC
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 422
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 124 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 20
K GC+ + + + GCHC DG + + +DC
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 423
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 278 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*ARILQSFPGTSSIRTSKTLISRRI 445
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,778,280
Number of Sequences: 37544
Number of extensions: 350818
Number of successful extensions: 938
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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