Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30195
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      49   4e-06
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      48   6e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      46   4e-05
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)           30   1.6  
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   3.6  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   4.8  
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       29   4.8  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_55378| Best HMM Match : Connexin50 (HMM E-Value=1.8)                28   8.4  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   8.4  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 507 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMMYKRGDYKY 686
           L+ P   +  T   LVNAIYFKG W   F +  +   +F  +    ++V MM+++  +KY
Sbjct: 111 LIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKFKY 170



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 325 ELKMANKVYVHDGGKLGENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 501
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE T  +I
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108

Query: 502 KD 507
            D
Sbjct: 109 CD 110


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +3

Query: 507 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSQDKTIKVPMMYKRGDYKY 686
           L+     +  T   LVNA+YFKG+W   F+   T    F  +  + I+V  MY+  +++Y
Sbjct: 148 LIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSEFRY 207

Query: 687 GESA 698
            ES+
Sbjct: 208 LESS 211



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/64 (31%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
 Frame = +1

Query: 319 GVELKMANKVYVHDGGKLGENFAVVSRDVFNSDVQNIDFSKNTVAAK-SINDWVEENTNN 495
           G ++ MAN+++   G ++ E F   S++ F++++  +D+ KN+  A+ ++N WVE+ T +
Sbjct: 84  GNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKD 143

Query: 496 RIKD 507
           +IK+
Sbjct: 144 KIKN 147


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = +1

Query: 325 ELKMANKVYVHDGGKLGENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRI 501
           E+++ NK++ HD  ++ E F   +R+ ++S++  +DF +K   A K +N WV + T   I
Sbjct: 54  EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113

Query: 502 KD 507
           K+
Sbjct: 114 KE 115



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 525 LSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV--SQDKTIKVPMMYKRGDYKYGESA 698
           ++S T  ++VNA+YFKG W  +F E  T    F+V  S +  I+V MM ++    +   A
Sbjct: 122 INSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKVNFYYDA 181

Query: 699 D 701
           D
Sbjct: 182 D 182


>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
          Length = 453

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +1

Query: 376 ENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKD*LIRTRSAQPQRLFSS 555
           E   ++  D   +D+ +I+  KN VAA S+  W    +   IKD L   +S+Q QR+F+ 
Sbjct: 104 EALRLLQTDRMMADM-SIELRKNNVAAISL--WPGPVSTEAIKDMLKSEKSSQMQRVFAD 160

Query: 556 TPSIS 570
           +  ++
Sbjct: 161 SEDVT 165


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 377 RILQSFPGTSSIRTSKTLISRRIQSQLS 460
           R+  SFPG S      TL++R  QSQ+S
Sbjct: 65  RLYDSFPGASRSEAESTLLARMRQSQVS 92


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +2

Query: 53  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 220
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = +1

Query: 247 YRLPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLGENFAVVSRDVFNSDVQN 426
           Y L DD+ +  E  S+++D  +++    K    +      K  E+  + S  +F+ + +N
Sbjct: 425 YFLSDDELL--EILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSGEGEN 477

Query: 427 IDFSKNTVAAKSINDW---VEENTNNRIKD*LIRTRSAQP 537
           +DFS +     ++ DW   VE    N ++D L +     P
Sbjct: 478 VDFSTDLYPTGNVEDWLLEVENTMRNSLRDTLRKALELYP 517


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 61  CHCRDGDSKQTNDCL 17
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_55378| Best HMM Match : Connexin50 (HMM E-Value=1.8)
          Length = 455

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 656 GYFDCFVLAHVEVTVTGQSLVKFR 585
           GY DC  + HV++T TG +  K++
Sbjct: 325 GYLDCDHMRHVKITATGGNQSKYQ 348


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 26/103 (25%), Positives = 45/103 (43%)
 Frame = -3

Query: 503 LMRLLVFSSTQSLIDLAATVFFEKSMFWTSELKTSLETTAKFSPSFPPS*TYTLFAILSS 324
           L  +L+FS+ Q+    AAT  F+         + +  TT K   + PP  +YT       
Sbjct: 41  LNSVLLFSTLQTDDKYAATHLFQSDRVPAMPSRPATTTTTKNVSALPPPPSYTAPQPPID 100

Query: 323 TPLIDRRSRLLLANSVRIASSSGSR*LSKALHGFHHQKLKLTE 195
              +D   R L+A ++  A S  ++  S++   FH   ++  E
Sbjct: 101 RERMDLHERSLVAQTI-AAFSVHTKATSRSHLEFHVAAVRAME 142


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 692 LSIFIIAAFIHHGYFDCF 639
           LS++++   +HH YF CF
Sbjct: 298 LSLYVVVVTVHHHYFFCF 315


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,626,299
Number of Sequences: 59808
Number of extensions: 413344
Number of successful extensions: 1263
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)