Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30194
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 163 1e-40
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 160 1e-39
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 9e-38
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 139 3e-33
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 97 2e-20
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 8e-13
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 71 8e-13
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 68 1e-11
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 60 1e-09
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_24074| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.021
SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 31 1.4
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 30 1.8
SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015) 30 2.4
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 30 2.4
SB_51296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5) 29 3.1
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 29 3.1
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 29 4.1
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_8907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_57416| Best HMM Match : rve (HMM E-Value=0.0011) 28 7.2
SB_56121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 7.2
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 7.2
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 28 7.2
SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3) 28 7.2
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 7.2
SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6) 28 7.2
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_11382| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_11056| Best HMM Match : FaeA (HMM E-Value=5.6) 28 7.2
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 9.5
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 28 9.5
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.5
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 28 9.5
SB_39409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_25785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_13552| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 163 bits (396), Expect = 1e-40
Identities = 75/86 (87%), Positives = 84/86 (97%)
Frame = +2
Query: 251 ETTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQ 430
++TAGDTHLGGEDFDN+MV+HFV++FK+KYKKD+ NKRA+RRLRTACERAKRTLSSSTQ
Sbjct: 220 KSTAGDTHLGGEDFDNKMVDHFVKQFKQKYKKDITPNKRAMRRLRTACERAKRTLSSSTQ 279
Query: 431 ASIEIDSLFEGIDFYTSITRARFEEL 508
ASIEIDSLFEGIDFYTSITRARFEEL
Sbjct: 280 ASIEIDSLFEGIDFYTSITRARFEEL 305
Score = 149 bits (360), Expect = 3e-36
Identities = 72/82 (87%), Positives = 78/82 (95%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 188
V +AV+TVPAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+
Sbjct: 139 VTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIY 198
Query: 189 DLGGGTFDVSILTIEDGIFEVK 254
DLGGGTFDVS+LTIEDGIFEVK
Sbjct: 199 DLGGGTFDVSVLTIEDGIFEVK 220
Score = 91.5 bits (217), Expect = 7e-19
Identities = 42/61 (68%), Positives = 52/61 (85%), Gaps = 2/61 (3%)
Frame = +1
Query: 514 DLFRSTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 687
DLF+ T EPVE+++RD+K+ K IHDIVLVGGSTRIPK+QK+LQ+ F GKELNKSINP
Sbjct: 308 DLFKKTTEPVEQAIRDSKIPGGKESIHDIVLVGGSTRIPKIQKMLQELFGGKELNKSINP 367
Query: 688 E 690
+
Sbjct: 368 D 368
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 160 bits (388), Expect = 1e-39
Identities = 75/93 (80%), Positives = 85/93 (91%)
Frame = +2
Query: 251 ETTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQ 430
++TAGDTHLGGEDFDNR+VNHFV EFKRKYKKD++ N RA+RRLRTACERAKRTLSSST+
Sbjct: 221 KSTAGDTHLGGEDFDNRLVNHFVAEFKRKYKKDMSKNSRAMRRLRTACERAKRTLSSSTE 280
Query: 431 ASIEIDSLFEGIDFYTSITRARFEELTPICSGL 529
ASIE+DSLFEGIDFYT I+RARFE+L CS L
Sbjct: 281 ASIEVDSLFEGIDFYTKISRARFEDL---CSDL 310
Score = 146 bits (354), Expect = 2e-35
Identities = 71/83 (85%), Positives = 79/83 (95%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 188
V +AVITVPAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIF
Sbjct: 139 VTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIF 198
Query: 189 DLGGGTFDVSILTIEDG-IFEVK 254
DLGGGTFDVSILTI+DG +FEVK
Sbjct: 199 DLGGGTFDVSILTIDDGSLFEVK 221
Score = 90.6 bits (215), Expect = 1e-18
Identities = 37/60 (61%), Positives = 52/60 (86%)
Frame = +1
Query: 511 ADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPE 690
+DLF S ++PV K+L DAK K+ IH++VLVGGSTR+PK+QK+L+++F+GK LNKSINP+
Sbjct: 308 SDLFLSCLDPVNKALSDAKFSKSDIHEVVLVGGSTRVPKIQKMLEEYFSGKSLNKSINPD 367
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 154 bits (373), Expect = 9e-38
Identities = 71/86 (82%), Positives = 81/86 (94%)
Frame = +2
Query: 251 ETTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQ 430
++T GDTHLGGEDFDN MV+ FV++FK+KYKKD+ NKRALRRLRTACERAKRTLSSSTQ
Sbjct: 313 KSTHGDTHLGGEDFDNNMVDFFVKQFKQKYKKDITPNKRALRRLRTACERAKRTLSSSTQ 372
Query: 431 ASIEIDSLFEGIDFYTSITRARFEEL 508
ASIEIDSL++GIDFYTSITRARFEE+
Sbjct: 373 ASIEIDSLYDGIDFYTSITRARFEEM 398
Score = 150 bits (363), Expect = 1e-36
Identities = 73/82 (89%), Positives = 77/82 (93%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 188
V +AV+TVPAYFNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIF
Sbjct: 232 VTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIF 291
Query: 189 DLGGGTFDVSILTIEDGIFEVK 254
DLGGGTFDVS+L+IEDGIFEVK
Sbjct: 292 DLGGGTFDVSVLSIEDGIFEVK 313
Score = 92.3 bits (219), Expect = 4e-19
Identities = 41/62 (66%), Positives = 56/62 (90%), Gaps = 1/62 (1%)
Frame = +1
Query: 508 DADLFRSTMEPVEKSLRDAKMD-KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 684
+A LF+ T+EPVEK+++D+K++ K +I +IV+VGGSTRIPK+Q LLQ+FFNGKELNKSIN
Sbjct: 399 NAHLFKKTLEPVEKAIKDSKLESKEKIDEIVMVGGSTRIPKIQSLLQNFFNGKELNKSIN 458
Query: 685 PE 690
P+
Sbjct: 459 PD 460
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAG 80
V +AV+TVPAYFNDSQRQATKDAG
Sbjct: 164 VTDAVVTVPAYFNDSQRQATKDAG 187
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 139 bits (336), Expect = 3e-33
Identities = 64/83 (77%), Positives = 77/83 (92%)
Frame = +3
Query: 3 KTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVL 182
K V +AV+TVPAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L
Sbjct: 835 KKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNIL 893
Query: 183 IFDLGGGTFDVSILTIEDGIFEV 251
+FDLGGGTFDVS+LTI++G+FEV
Sbjct: 894 VFDLGGGTFDVSLLTIDNGVFEV 916
Score = 99 bits (238), Expect = 2e-21
Identities = 45/84 (53%), Positives = 62/84 (73%)
Frame = +2
Query: 257 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQAS 436
T GDTHLGGEDFD ++ HF++ +K+K K++ + RA+++LR E+AKR LS+ QA
Sbjct: 919 TNGDTHLGGEDFDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLRREVEKAKRALSTQHQAR 978
Query: 437 IEIDSLFEGIDFYTSITRARFEEL 508
+EI+S FEG DF +TRARFEEL
Sbjct: 979 VEIESFFEGEDFSEMLTRARFEEL 1002
Score = 87.4 bits (207), Expect = 1e-17
Identities = 38/61 (62%), Positives = 53/61 (86%)
Frame = +1
Query: 508 DADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 687
+A LF+ST++PV+K L DA + K++IH+IVLVGGSTRIPKVQ+L++DFF GKE ++ INP
Sbjct: 1003 NAKLFKSTLKPVQKVLEDADLKKSEIHEIVLVGGSTRIPKVQQLVKDFFEGKEPSRGINP 1062
Query: 688 E 690
+
Sbjct: 1063 D 1063
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 96.7 bits (230), Expect = 2e-20
Identities = 47/80 (58%), Positives = 61/80 (76%)
Frame = +3
Query: 6 TVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLI 185
TV AV++VPA F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++
Sbjct: 168 TVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMV 226
Query: 186 FDLGGGTFDVSILTIEDGIF 245
DLGGGT DVS+L I+ G+F
Sbjct: 227 VDLGGGTLDVSLLNIQGGMF 246
Score = 70.5 bits (165), Expect = 1e-12
Identities = 26/59 (44%), Positives = 47/59 (79%)
Frame = +1
Query: 514 DLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPE 690
DLF+ ++P+ + L + ++ K ++ ++VLVGGSTR+PK+++L+Q+FF+GK N +I+PE
Sbjct: 341 DLFKKVLQPIRRVLAEVELPKEEVDEVVLVGGSTRVPKIRQLIQEFFDGKPPNVAIDPE 399
Score = 46.4 bits (105), Expect = 3e-05
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = +2
Query: 260 AGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASI 439
AG+ LGG+DF+ R + + +Q +++ + L T ++RLR E AK L+ + + +I
Sbjct: 252 AGNNRLGGQDFNARFMQYLLQLIHKRFNRQL-TCSEDIQRLRQEVEAAKINLTRTNEVTI 310
Query: 440 E--IDSLFEG---IDFYTSITRARFEEL 508
+ + SL EG + F +I+R FE +
Sbjct: 311 KLMLPSLSEGKKIVKFKETISRKMFETI 338
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 71.3 bits (167), Expect = 8e-13
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 TTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSST-Q 430
+TA + +LGG DFD +V HF QEFK KYK D+ ++ +A +L CE+ K+ +S++T +
Sbjct: 281 STAVEPNLGGRDFDYVLVEHFAQEFKTKYKIDVHSSIKAKIKLGAECEKLKKLMSANTSE 340
Query: 431 ASIEIDSLFEGIDFYTSITRARFEEL 508
I I+ E D + + RA+FEEL
Sbjct: 341 IPINIECFMEDKDVHGRMKRAQFEEL 366
Score = 62.5 bits (145), Expect = 4e-10
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNV 179
V + VI+VP+Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV
Sbjct: 196 VTDCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNV 255
Query: 180 LIFDLGGGTFDVSILTIEDGIFEVKPPPATP 272
+ D+G + V I G +V P
Sbjct: 256 VFVDIGHSSLQVCITAFLKGQLKVLSTAVEP 286
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 71.3 bits (167), Expect = 8e-13
Identities = 47/84 (55%), Positives = 53/84 (63%), Gaps = 26/84 (30%)
Frame = +3
Query: 3 KTVQNAVITVPAYFNDSQRQATKDAGTISGLN------------------------VLRI 110
+ V+ AVITVPA+FND+QRQATKDAGTI+GL+ VLRI
Sbjct: 36 QAVKRAVITVPAHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRI 95
Query: 111 INEPTAAAIAYGLDKK--GTGERN 176
INEPTAAAIAYGLDK G ERN
Sbjct: 96 INEPTAAAIAYGLDKARGGKAERN 119
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 68.1 bits (159), Expect = 7e-12
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +2
Query: 251 ETTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQ 430
+ T GDT+LGGEDFDN ++ + EFK++ DL+ + AL+RLR A E+AK LSSS Q
Sbjct: 27 KATNGDTYLGGEDFDNTLLKFLIAEFKKESGVDLSKDSMALQRLREAAEKAKIELSSSVQ 86
Query: 431 ASIEI 445
I +
Sbjct: 87 TDINL 91
Score = 67.7 bits (158), Expect = 1e-11
Identities = 32/75 (42%), Positives = 52/75 (69%)
Frame = +1
Query: 511 ADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPE 690
ADL T+ P +K L+DA+++K +I D++LVGG TR+PKVQ+ +QD F G+ +K++NP+
Sbjct: 118 ADLINRTVGPCKKCLQDAEINKGEIGDVLLVGGMTRMPKVQQTVQDIF-GRVPSKAVNPD 176
Query: 691 RGRSLWCSCPGCYLA 735
++ + G LA
Sbjct: 177 EAVAIGAAIQGGVLA 191
Score = 44.8 bits (101), Expect = 8e-05
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +3
Query: 177 VLIFDLGGGTFDVSILTIEDGIFEVK 254
+ ++DLGGGTFD+SIL I+ G+FEVK
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVFEVK 27
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 67.7 bits (158), Expect = 1e-11
Identities = 32/75 (42%), Positives = 52/75 (69%)
Frame = +1
Query: 511 ADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPE 690
ADL T+ P +K L+DA+++K +I D++LVGG TR+PKVQ+ +QD F G+ +K++NP+
Sbjct: 63 ADLINRTVGPCKKCLQDAEINKGEIGDVLLVGGMTRMPKVQQTVQDIF-GRVPSKAVNPD 121
Query: 691 RGRSLWCSCPGCYLA 735
++ + G LA
Sbjct: 122 EAVAIGAAIQGGVLA 136
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 60.5 bits (140), Expect = 1e-09
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Frame = +2
Query: 257 TAGDTHLGGEDFDNRMVNHFVQEFKR-----KYKKDLATNKRALRRLRTACERAKRTLSS 421
T D LGG +FD +++ +FKR K+K D TNKR+ +L+T+ E+ K LS+
Sbjct: 183 TEYDGALGGRNFDEVLLDLLANDFKRQVLLWKWKIDPLTNKRSKTKLQTSAEQCKNILST 242
Query: 422 STQASIEIDSLFEGIDFYTSITR 490
A+ +DSL EGIDF ++R
Sbjct: 243 LESANCSVDSLCEGIDFQGQVSR 265
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +2
Query: 266 DTHLGGEDFDNRMVNHFVQEFKR--KYKKDLATNKRALRRLRTACERAKRTLSSSTQASI 439
D LGG D R+ +H VQ FK+ K+K ++ + RA+ + R K+ LS++ +
Sbjct: 207 DRTLGGHAIDMRLRDHLVQLFKKNYKFKGEVTQSSRAMAKFYKEALRVKQVLSANNEIFA 266
Query: 440 EIDSLFEGIDFYTSITRARFEEL 508
+I+ +F+G DF +TR EE+
Sbjct: 267 QIEGVFDGKDFRVKVTREELEEM 289
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERN 176
+++ V+TVP +FN ++R+A A + GLNVL+I+N TA A+ YGL ++ T E++
Sbjct: 105 IKDVVLTVPPFFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKH 164
Query: 177 VLIFDLGGGTFDVSIL 224
+ +D+G + +I+
Sbjct: 165 FMFYDMGASSTVATIV 180
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/64 (40%), Positives = 34/64 (53%)
Frame = +1
Query: 514 DLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPER 693
DLF PV ++L+ A M I +VLVGG R+PKVQ L EL K+IN +
Sbjct: 292 DLFDRVAGPVNRALKSASMTMNDIDSVVLVGGGIRVPKVQDALLRAVKKPELAKNINADE 351
Query: 694 GRSL 705
+L
Sbjct: 352 AAAL 355
>SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/41 (41%), Positives = 33/41 (80%)
Frame = +1
Query: 568 MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPE 690
+ ++ + ++LVGG+TR PK+Q+LL+++F GKE+ + I+P+
Sbjct: 35 LKQSSMIQVILVGGATRTPKIQQLLKNYFVGKEICRRISPD 75
>SB_24074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 580 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPERGRSLWCS 714
+I + +VGGSTRIP ++ ++++ F GKEL ++N + + C+
Sbjct: 6 EIDSVEIVGGSTRIPAIKDIIKNVF-GKELMTTMNADEAVARGCA 49
>SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 313 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGK 405
LCP ++ + GP +++E AFA C+ GK
Sbjct: 169 LCPSPEQNGEPGPMFEREGGDAFANCVARGK 199
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 177 VLIFDLGGGTFDVSILTIEDGIFEVK 254
V I+DLG GT++++IL E G++ ++
Sbjct: 319 VPIYDLGNGTYEMAILFHEPGVYSIR 344
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 GTFDVSILTIEDGIFEVKPPPATPTWEVRTLT----IAWSTTLSRSSRGNTKRTSLPTRE 368
G+ + + DG+F VKP P P++E T I + TT + + N + + L T E
Sbjct: 124 GSNQTQLFRLIDGLFRVKPVPLLPSYESPTALAEDFILFFTTKIQHLKDNLRSSPLLTME 183
Query: 369 L 371
+
Sbjct: 184 M 184
>SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 304 GQPLCPGVQEEIQKGPRYQQESS*AFAYCM 393
G LCP ++ + GP +++E S AFA C+
Sbjct: 218 GYKLCPLPEQNGEPGPMFEREGSDAFANCV 247
>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
Length = 600
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 183 IFDLGGGTFDVSILTIEDGIFEV 251
+FDLG G+++V L +E G++ V
Sbjct: 311 VFDLGNGSYEVLFLVMEPGVYRV 333
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 249 VKPPPATPTWEVRTL-TIAWSTTLSRSSRGNTKRTSLPTREL 371
+ PPPA T E L T +W+ T S + R KRT LPT L
Sbjct: 434 ILPPPAFQTDEPERLQTSSWTETASGTGREEFKRT-LPTAAL 474
>SB_51296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -2
Query: 578 ALSILASRRDFSTGSMVDLNRSASAP--RSEHE*LTCRSQYPQRENLSQCSLVWTMTRSS 405
+L+++ RRD+ + LNR A+ P S R+ P ++ LSQ ++ W + R
Sbjct: 14 SLAVVLQRRDWKNPGITQLNRLAAHPPFASWRNSEETRTDRPSQQLLSQ-NVEWRLMRYF 72
Query: 404 LPSHM 390
L +H+
Sbjct: 73 LLTHL 77
>SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5)
Length = 452
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 313 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGK 405
LCP ++ GP +++E S AFA C+ GK
Sbjct: 206 LCPLPEQNGGPGPMFEREGSDAFANCVTRGK 236
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 284 HLPSGCRRRWFHLEDTILDGKDGHVEGTAAEVKDKYISFSSTLFVKTVSNRSS 126
+LP+ CR L IL GKD VEG D Y+ S + K V R +
Sbjct: 407 YLPTACR-----LTVAILKGKDLRVEGEETTEIDTYVKVSMIMGGKAVKKRKT 454
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 GTFDVSILTIEDGIFEVKPPPATPTWE-VRTLT---IAWSTTLSRSSRGNTKRTSLPTRE 368
G+ + + DG+F VKP P P++E + L I++ TT + + N + + L T E
Sbjct: 984 GSNQTQLFRLIDGLFRVKPVPLLPSYESPQALAEDFISFFTTKIQHLKDNLRSSPLLTME 1043
Query: 369 L 371
+
Sbjct: 1044 M 1044
>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 260 RWFHLEDTILDGKDGHVEGTAAEVKDKY-ISFSSTLFVKTVSNRSSS 123
RW +L +++ + V G+A E++ KY +++S L +T NR S
Sbjct: 464 RWINLRNSLREQLSPGVLGSALELRVKYFVNYSQLLLEETRHNRQVS 510
>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 219 ILTIEDGIFEVKPPPATPTWEVRTLTIAWSTTLSR-SSRGNTKRTSLPTRELLGVCVLHV 395
ILT+E+G+F+ E L+ +WS R + G K S+P G C LH
Sbjct: 799 ILTLENGLFKQHDSSIRELVEFLELSRSWSLLHPRWAPCGLAKVLSVP-HCCWGSCALHH 857
Query: 396 RGQR 407
GQR
Sbjct: 858 LGQR 861
>SB_8907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 GTFDVSILTIEDGIFEVKPPPATPTWE-VRTLT---IAWSTTLSRSSRGNTKRTSLPTRE 368
G+ + + DG+F VKP P P++E + L I++ TT + + N + + L T E
Sbjct: 192 GSNQTRLFRLIDGLFRVKPVPLLPSYESPQALAEDFISFFTTKIQHLKDNLRSSPLLTME 251
Query: 369 L 371
+
Sbjct: 252 M 252
>SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 807
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 330 LNSWTKWLTMRLSKSSPPKWVSPAVVSP 247
L+ +T+W+ R+SK P V+P ++P
Sbjct: 451 LSKFTQWIRRRMSKKDPDPAVTPKHITP 478
>SB_56121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +2
Query: 491 ARFEELTPICSGLPW--SQWRSLYVMPRWIRL--KSTILY--WWVAPLVSPRCRSSCKIS 652
AR P+ S P ++R L+++PRW + KST+L+ V P S R RS ++
Sbjct: 218 ARVRSSPPVASLDPGVRQEYRPLHMLPRWTLVYGKSTVLFTSCLVGPWCSARVRSPPPVA 277
Query: 653 LME 661
++
Sbjct: 278 SLD 280
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 GTFDVSILTIEDGIFEVKPPPATPTWE-VRTLT---IAWSTTLSRSSRGNTKRTSLPTRE 368
G+ + + DG+F VKP P P++E + L I + TT + + N + + L T E
Sbjct: 325 GSNQTQLFRLIDGLFRVKPVPLLPSYESPQALAEDFILFFTTKIQHLKDNLRSSPLLTME 384
Query: 369 L 371
+
Sbjct: 385 M 385
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 GTFDVSILTIEDGIFEVKPPPATPTWE-VRTLT---IAWSTTLSRSSRGNTKRTSLPTRE 368
G+ + + DG+F VKP P P++E + L I + TT + + N + + L T E
Sbjct: 329 GSNQTQLFRLIDGLFRVKPVPLLPSYESPQALAEDFILFFTTKIQHLKDNLRSSPLLTME 388
Query: 369 L 371
+
Sbjct: 389 M 389
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 670 NKSINPERGRSLWCSCPGC 726
++ +NP SL+CSCP C
Sbjct: 1220 HEKLNPNEKTSLYCSCPTC 1238
>SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3)
Length = 439
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 313 LCPGVQEEIQKGPRYQQESS*AFAYCM 393
LCP ++ + GP +++E S AFA C+
Sbjct: 107 LCPLPEQNGEPGPMFEREGSDAFANCV 133
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +3
Query: 171 RNVLIFDLGGGTFDVSILTIEDGIFEVKPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRT 350
R V+ F GGT S + E+ +FEVK P P+ +A + + S + N +
Sbjct: 905 RRVISFHSVGGTSWDSSVADEEDLFEVKKKPDKPSLLAALKPVARQES-NASLKSNKSAS 963
Query: 351 SLPTR 365
+P R
Sbjct: 964 RIPVR 968
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 GTFDVSILTIEDGIFEVKPPPATPTWE-VRTLT---IAWSTTLSRSSRGNTKRTSLPTRE 368
G+ + + DG+F VKP P P++E + L I + TT + + N + + L T E
Sbjct: 472 GSNQTQLFRLIDGLFRVKPVPLLPSYESPQALAEDFILFFTTKIQHLKDNLRSSPLLTME 531
Query: 369 L 371
+
Sbjct: 532 M 532
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 GTFDVSILTIEDGIFEVKPPPATPTWE-VRTLT---IAWSTTLSRSSRGNTKRTSLPTRE 368
G+ + + DG+F VKP P P++E + L I + TT + + N + + L T E
Sbjct: 1051 GSNQTQLFRLIDGLFRVKPVPLLPSYESPQALAEDFILFFTTKIQHLKDNLRSSPLLTME 1110
Query: 369 L 371
+
Sbjct: 1111 M 1111
>SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6)
Length = 533
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 313 LCPGVQEEIQKGPRYQQESS*AFAYCM 393
LCP ++ + GP +++E S AFA C+
Sbjct: 74 LCPLPEQNGEPGPMFEREGSDAFANCV 100
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 GTFDVSILTIEDGIFEVKPPPATPTWE-VRTLT---IAWSTTLSRSSRGNTKRTSLPTRE 368
G+ + + DG+F VKP P P++E + L I + TT + + N + + L T E
Sbjct: 27 GSNQTQLFRLIDGLFRVKPVPLLPSYESPQALAEDFILFFTTKIQHLKDNLRSSPLLTME 86
Query: 369 L 371
+
Sbjct: 87 M 87
>SB_11382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -2
Query: 632 CTLGIRVEPPTSTISWI*-ALSILASRRDFSTGSMVDLNRSASAP--RSEHE*LTCRSQY 462
CTL + +P ST AL+++ RRD+ + LNR A+ P S R+
Sbjct: 42 CTLRLFGDPLESTCRHASLALAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDR 101
Query: 461 PQRENLSQCSLVWTMTRSSLPSHM 390
P ++ L + W + R L +H+
Sbjct: 102 PSQQ-LRSLNGEWRLMRYFLLTHL 124
>SB_11056| Best HMM Match : FaeA (HMM E-Value=5.6)
Length = 261
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 GTFDVSILTIEDGIFEVKPPPATPTWE-VRTLT---IAWSTTLSRSSRGNTKRTSLPTRE 368
G+ + + DG+F VKP P P++E + L I + TT + + N + + L T E
Sbjct: 192 GSNQTQLFRLIDGLFRVKPVPLLPSYESPQALAEDFILFFTTKIQHLKDNLRSSPLLTME 251
Query: 369 L 371
+
Sbjct: 252 M 252
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -3
Query: 604 PPVQYRGFEPYP---SWHHVETSPL 539
PP+ R F P P WH +ETSP+
Sbjct: 547 PPLPQRQFRPRPYPHEWHKLETSPV 571
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -2
Query: 698 RPRSGLIDLLSSFPLKKSCRSFCTLGIR----VEPPTSTISWI*ALSILASRRDFSTGSM 531
R GL PL K+ F +L EP S+ +L+++ RRD+ +
Sbjct: 1705 RKHRGLYHTHEDEPLAKTNEPFISLQPHGKDAAEPKKECESYYNSLAVVLQRRDWENPGV 1764
Query: 530 VDLNRSASAP 501
LNR A+ P
Sbjct: 1765 TQLNRLAAHP 1774
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Frame = -2
Query: 254 FHLEDTILDGKDGHVEGTAAEVK--DKYISFSSTLFVKTVSNRSSS--RFIDDSENVQ-- 93
F L D+ G++GH EG+ +EV + ++ + F +T S S F ++S ++Q
Sbjct: 287 FVLVDSKDSGENGHTEGSNSEVGTIENFVKTQTKQFKQTACKYSESNLEFNENSAHLQVY 346
Query: 92 -ARDGTC 75
AR TC
Sbjct: 347 NARISTC 353
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTG 167
+ NA +T+P YF + +K G G+ + +++ I+Y LD+K TG
Sbjct: 1020 IYNAPLTLPPYFWCHPSRKSKKDGAKEGMAM--AMSKERNQEISYKLDRKWTG 1070
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 185 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 99
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 517
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 755 PPQTCHRAR*QPGQLHHKLRPRSGLIDLLSSFPLKKSCRSFC 630
P T ++ + G + L SG IDLLSSFP+ + R C
Sbjct: 140 PNTTYMKSIVESGTVEVLLEFMSGSIDLLSSFPVLVTLRPLC 181
>SB_39409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = -2
Query: 677 DLLSSFPLKKSCRSFCTLGIRVEPPTSTI------SWI*ALSILASRRDFSTGSMVDLNR 516
++L++F L SC L + PP + S+ +L+++ RRD+ + LNR
Sbjct: 54 EILAAFELSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQLNR 113
Query: 515 SASAP 501
A+ P
Sbjct: 114 LAAHP 118
>SB_25785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 27.9 bits (59), Expect = 9.5
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -2
Query: 671 LSSFPLKKSCRSFCTLGIRVEPPTSTISWI*ALSILASRRDFSTGSMVDLNRSASAP--R 498
L++ PL R+ T G +E S AL+++ RRD+ + LNR A+ P
Sbjct: 79 LTTPPLADQKRTIYTYGDPLESTCRHASL--ALAVVLQRRDWENPGVTQLNRLAAHPPFA 136
Query: 497 SEHE*LTCRSQYPQRENLSQCSLVWTMTRSSLPSHM 390
S R+ P ++ L + W + R L +H+
Sbjct: 137 SWRNSEEARTDRPSQQ-LRSLNGEWRLMRYFLLTHL 171
>SB_13552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = -2
Query: 671 LSSFPLKKSCRSFCTLGIRVEPPTSTI------SWI*ALSILASRRDFSTGSMVDLNRSA 510
LSSF L SC L + PP + S+ +L+++ RRD+ + LNR A
Sbjct: 3 LSSFLLSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLA 62
Query: 509 SAP 501
+ P
Sbjct: 63 AHP 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,810,793
Number of Sequences: 59808
Number of extensions: 547826
Number of successful extensions: 4404
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 4146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4396
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -