Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30192
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   1.1  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   7.9  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 192 ILEHVYATWINDY*VSLVDDKAVRAKPIFFQIQFVKQNKKMNS 320
           + E     W N+Y  SLV    V   PI +   +   N+  NS
Sbjct: 522 VAERALCLWSNEYFTSLVSQNVVTLLPIIYPSLYKTANEHWNS 564


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 106 EKS*FIKYIKHDTKFYFNYENRLKT 32
           E S  ++ +K + K YFNY+N L +
Sbjct: 153 EMSKTLRALKEEKKMYFNYDNFLSS 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,290
Number of Sequences: 5004
Number of extensions: 54480
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)