Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30192
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26612| Best HMM Match : NC (HMM E-Value=6.7)                        30   2.1  
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)                    28   6.3  
SB_29472| Best HMM Match : DUF964 (HMM E-Value=4.7)                    28   8.4  

>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
          Length = 451

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 156 YSFSVIKYRVVFILEHVYATWINDY*VSLVDDKAVRAKPIFFQIQFV 296
           Y+ SV  YR+  +++ VY   +  + V+LV D    A   FF++  V
Sbjct: 294 YTASVTFYRLTPVMDTVYTASVTFFRVTLVMDTVYTASVTFFRVTLV 340



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 156 YSFSVIKYRVVFILEHVYATWINDY*VSLVDDKAVRAKPIFFQI 287
           Y+ SV  +RV  ++  VY   +  Y ++LV D    A   FF++
Sbjct: 328 YTASVTFFRVTLVMNTVYTASVTFYRLTLVMDTVYTASVTFFRV 371



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 156 YSFSVIKYRVVFILEHVYATWINDY*VSLVDDKAVRAKPIFFQIQFV 296
           Y+ SV  YR+  +++ VY   +  Y ++ V D    A   FF++  V
Sbjct: 277 YTASVTFYRLTLVMDTVYTASVTFYRLTPVMDTVYTASVTFFRVTLV 323


>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
          Length = 905

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 75  CFIYLMNYDFSYIVRSIHKYNGFKYNTYSFSVIKYRVVFILEHVY 209
           C ++  +YD+  +      Y    Y++Y++ V+ Y   +  EH Y
Sbjct: 804 CMVFYDSYDYKLVFYGFFAYKVVFYDSYAYKVVFYD-SYAYEHKY 847


>SB_29472| Best HMM Match : DUF964 (HMM E-Value=4.7)
          Length = 344

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 297 KQNKKMNSRSEMLFGLSVISLNTRHLSLLLKVPFYLVLAS 416
           K+ ++++++ E   GLS   L   H SLLLK   YL L+S
Sbjct: 243 KETEELSTKPEQGEGLSEDELALFHNSLLLKTNSYLSLSS 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,509
Number of Sequences: 59808
Number of extensions: 326940
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)