Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30191X
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    75   2e-15
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   1.4  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    24   4.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    24   5.5  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    24   5.5  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    23   7.3  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    23   7.3  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    23   7.3  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    23   7.3  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    23   7.3  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    23   7.3  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    23   9.6  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    23   9.6  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 74.9 bits (176), Expect = 2e-15
 Identities = 39/94 (41%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
 Frame = +3

Query: 12  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 188
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 189 SAVESGVDIVLNHRLVETYAFGTRNPTHCLKNYM 290
              E+  ++V + RL  T +F  ++    +K YM
Sbjct: 60  EGTETVNNLVYSFRLSPT-SFDKKSYMSYIKGYM 92


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 227 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 129
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 122 SRHQPTGHFVNNFIDQFHFVSVREHLITSD 33
           SRH+   HFV +F D  ++  V E+    D
Sbjct: 65  SRHRNIIHFVESFEDNVYYYVVLEYCPLGD 94


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +3

Query: 54  SDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEE-----ADEGTDSAVES-GVDI 215
           S+TY   + DE+ +            D   E F    EE     A E ++   ++  +D+
Sbjct: 139 SNTY---VQDEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSEEPEDTRAIDV 195

Query: 216 VLNHRLVE 239
           VL+HRL+E
Sbjct: 196 VLDHRLIE 203


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 81  DEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTD 188
           DEV +  +G       G+  ++  +   EE+DE  D
Sbjct: 103 DEVFFSASGDATIHLSGNFLVDEEDEEEEESDEDYD 138


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 18  IYKDIITGDEMFSDTYKMKLVDEV 89
           I+++++TG ++FS   K+  V EV
Sbjct: 233 IFEEMVTGGDLFSYLTKLGTVPEV 256


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 123 LSSPTYRSLRK*LHRPIS 70
           +SSP+  SL K LH+P S
Sbjct: 215 VSSPSAHSLEKSLHKPAS 232


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 144 EGFNPSAEEADEGTDSAVESGVD 212
           +G + SA + D  TDS VES V+
Sbjct: 98  DGVHVSAVQLDNETDSEVESEVE 120


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 227 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDITLCS 120
           ++Q  V++ L+   R    L ++R+  LD+D   CS
Sbjct: 18  ILQGSVDTNLNETGRLQAKLLAQRLLPLDIDQIFCS 53


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 78  VDEVIYEVTGRLVTRAQGDIQIEG 149
           +D V +EV  R   +A+ D Q+EG
Sbjct: 386 IDAVPFEVPQRSAIKARDDEQVEG 409


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 30  IITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEG 182
           II G+E+  +  K + V          + T A+GDI        + E +EG
Sbjct: 557 IIEGEELLEEMKKRENVKHNSQNFASPMQTDAEGDIVQNEEEKESVEVEEG 607


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 79  SMKLFTK*PVGW*REHRVISRSRV 150
           ++K+     +GW R HR + R+++
Sbjct: 91  TIKILKTQDIGWIRHHRNVERAKI 114


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 114 VTRAQGDIQIEGFNPSAEE 170
           +TRA+  +Q++G NP +E+
Sbjct: 128 LTRAEYILQLQGINPVSED 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,167,643
Number of Sequences: 5004
Number of extensions: 19910
Number of successful extensions: 51
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)