Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30191X
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    61   2e-10
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734...    30   0.29 
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    30   0.38 
05_01_0015 + 117238-117996                                             28   1.6  
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109...    28   1.6  
06_01_0750 + 5624983-5625173,5626229-5626291,5626421-5626967,562...    26   4.7  
07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072...    25   8.3  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
 Frame = +3

Query: 12  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 182
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 183 TDSAVESGVDIVLNHRLVETYAFGTRNPTHCLKNYM 290
            D      VDIV   RL E   F  +     +K Y+
Sbjct: 60  VDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYI 95


>03_03_0210 +
           15470680-15470715,15473088-15473342,15473417-15473499,
           15473617-15473698,15474886-15474939
          Length = 169

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 138 QIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGTRNPT-HCLKNYM 290
           ++E  NP+AEE +E  +   E   +I +     + + F T N T HC   Y+
Sbjct: 71  EVEDTNPAAEETNETAEEEAEEKPEIKIETAPAD-FRFPTTNQTRHCFTRYV 121


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 117 TRAQGDIQIEGFNPSAEEADEGTDSAVESGVD--IVLNHRLVETYAFGTRNP 266
           TR+   +Q++GF PSA ++ +G+ + V S  +  IV   +L +T   G   P
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGNAPP 878


>05_01_0015 + 117238-117996
          Length = 252

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 159 SAEEADEGTDSAVESGVDIVLNHRLVETYAFGT 257
           +A  ADEG  S +E G  +V   RLVE  ++ T
Sbjct: 14  TAASADEGQRSVLEFGAIVVCPRRLVEVDSYHT 46


>02_05_1057 +
           33809982-33810366,33810436-33810687,33810727-33810926,
           33811021-33811122
          Length = 312

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 48  MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIV 218
           +FS       VDE I +E+    +    G+I ++GF         G D+AVE  ++ V
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV 158


>06_01_0750 +
           5624983-5625173,5626229-5626291,5626421-5626967,
           5627075-5627226,5627317-5627533
          Length = 389

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 48  MFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNP 158
           +F+  Y   +   V Y V G LVTRA+G + +  F P
Sbjct: 261 LFTAVYSGIVCSGVAYYVQG-LVTRARGPVFVTAFQP 296


>07_03_0312 +
           16606724-16606796,16606885-16607015,16607105-16607274,
           16607365-16607511,16608248-16608299,16608725-16608899,
           16609523-16609605,16610528-16610740,16611850-16611981,
           16612517-16612652,16613218-16613273,16613868-16613910,
           16613990-16614435
          Length = 618

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 132 DIQIEGFNPSAEEADEGTDSAVESGVD 212
           +I IEG N + E    GT S  ESG D
Sbjct: 504 EINIEGRNRNDEYLCNGTKSVTESGED 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,232,540
Number of Sequences: 37544
Number of extensions: 121705
Number of successful extensions: 255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)