Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30191X
         (300 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.23 
SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               26   4.9  
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    26   4.9  
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)                 26   4.9  
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               26   4.9  
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)                 26   4.9  
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_45444| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    25   8.6  
SB_1062| Best HMM Match : Sushi (HMM E-Value=2.2)                      25   8.6  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         25   8.6  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 111 LVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVE 239
           +V+  QG D  + G N SAE+A +  +    +G ++V+ +RLVE
Sbjct: 39  IVSEKQGIDENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVE 82


>SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 323

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 283 FLRQCVGFLVPKAYVSTSLWFRTMST 206
           F + C G  VPK  VS + W  T++T
Sbjct: 37  FAKVCKGKAVPKERVSAATWSPTLAT 62


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 158 RIKTLDLDITLCSRHQPTGHFVN-NFIDQFH 69
           +  T+D+D+   + H P   F+N  F+D  H
Sbjct: 692 KCSTIDMDVNYMTIHMPHQLFINGEFVDSHH 722


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 283 FLRQCVGFLVPKAYVSTSLWFRTMST 206
           F + C G  VPK  VS + W  T++T
Sbjct: 150 FAKVCKGKAVPKERVSAATWSPTLAT 175


>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
          Length = 998

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 283 FLRQCVGFLVPKAYVSTSLWFRTMST 206
           F + C G  VPK  VS + W  T++T
Sbjct: 242 FAKVCKGKAVPKERVSAATWSPTLAT 267


>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 283 FLRQCVGFLVPKAYVSTSLWFRTMST 206
           F + C G  VPK  VS + W  T++T
Sbjct: 426 FAKVCKGKAVPKERVSAATWSPTLAT 451


>SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 528

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 283 FLRQCVGFLVPKAYVSTSLWFRTMST 206
           F + C G  VPK  VS + W  T++T
Sbjct: 242 FAKVCKGKAVPKERVSAATWSPTLAT 267


>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
          Length = 870

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 283 FLRQCVGFLVPKAYVSTSLWFRTMST 206
           F + C G  VPK  VS + W  T++T
Sbjct: 242 FAKVCKGKAVPKERVSAATWSPTLAT 267


>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 283 FLRQCVGFLVPKAYVSTSLWFRTMST 206
           F + C G  VPK  VS + W  T++T
Sbjct: 526 FAKVCKGKAVPKERVSAATWSPTLAT 551


>SB_45444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 21  YKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDI---QIEGFNPSAEEADEGTDS 191
           +++I+T  E  ++  ++K     +  VT R + +  G     +IE F  +AEE  E  + 
Sbjct: 31  WEEIVTRLE--NEVQQLKNPGNAVVYVTRRKLKKFDGQTSAPEIEEFKENAEEIQELRNL 88

Query: 192 AVESGVDIVLNH 227
             +   D VL+H
Sbjct: 89  NGKQAADFVLSH 100


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 134 ITLCSRHQPTGHF 96
           +TLC R +P GHF
Sbjct: 120 VTLCHREKPVGHF 132


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = +3

Query: 102 TGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGTR 260
           +G  VT   G    EGFNPS      G    +E    ++   + ++     TR
Sbjct: 604 SGTFVTVVVGRDADEGFNPSYTVITPGVPYKIEPSTGVIRTSKSLDQSELSTR 656


>SB_1062| Best HMM Match : Sushi (HMM E-Value=2.2)
          Length = 100

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 269 CRISCTEGVCFD*PVVQDYVNSALDGR 189
           CR+SC     F+     DY+ S LDG+
Sbjct: 55  CRVSCNLYYDFEFLAAPDYICSDLDGK 81


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +3

Query: 15  KIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSA 194
           K+Y+++    ++  DTY+ +L DE+  +  G    + + +  +E  N + EE    + S+
Sbjct: 613 KLYEEMEQQIKVVRDTYQQELEDEIAMKEKGEQEIKTENEKLLEK-NWTLEEQLNSSVSS 671

Query: 195 VE 200
           +E
Sbjct: 672 LE 673


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,557,137
Number of Sequences: 59808
Number of extensions: 137742
Number of successful extensions: 377
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)