Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30191X
(300 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 96 5e-21
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 28 1.1
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 28 1.1
AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical ... 28 1.1
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 28 1.1
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 28 1.1
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 28 1.1
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 27 2.5
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 27 2.5
Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical pr... 27 3.3
AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492690-1|AAM49742.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein. 27 3.3
AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm transme... 27 3.3
Z73911-4|CAA98141.2| 625|Caenorhabditis elegans Hypothetical pr... 26 4.4
U28738-14|AAA68316.2| 129|Caenorhabditis elegans Hypothetical p... 26 4.4
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 26 5.8
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 26 5.8
Z83223-6|CAB05719.1| 884|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z82070-4|CAB04913.2| 227|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z81538-6|CAB04387.1| 884|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical pr... 25 7.6
AF005246-1|AAB95119.1| 556|Caenorhabditis elegans voltage-depen... 25 7.6
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 95.9 bits (228), Expect = 5e-21
Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
Frame = +3
Query: 12 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 185
M IYKDI T DE+ SD++ MKLVD+++YE G+ V R +G+I + G NPSAEE D+G+
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGS 60
Query: 186 DSAVESGVDIVLNHRLVE 239
D VE G+DIVLNH+LVE
Sbjct: 61 DEHVERGIDIVLNHKLVE 78
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 150 FNPSAEEADEGTDSAVESG-VDIVLNH 227
F+PSA +ADE D A E G VD L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 150 FNPSAEEADEGTDSAVESG-VDIVLNH 227
F+PSA +ADE D A E G VD L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262
>AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical
protein H24G06.1e protein.
Length = 543
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 144 EGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGTRNPTHC 275
E N S E D G+D + S V+ L+E GT+NP C
Sbjct: 407 EQMNKSMEGPDLGSDESPRSSVNSHEWQNLMENSQDGTKNPLIC 450
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 144 EGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGTRNPTHC 275
E N S E D G+D + S V+ L+E GT+NP C
Sbjct: 533 EQMNKSMEGPDLGSDESPRSSVNSHEWQNLMENSQDGTKNPLIC 576
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 144 EGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGTRNPTHC 275
E N S E D G+D + S V+ L+E GT+NP C
Sbjct: 1465 EQMNKSMEGPDLGSDESPRSSVNSHEWQNLMENSQDGTKNPLIC 1508
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 144 EGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGTRNPTHC 275
E N S E D G+D + S V+ L+E GT+NP C
Sbjct: 1544 EQMNKSMEGPDLGSDESPRSSVNSHEWQNLMENSQDGTKNPLIC 1587
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 212 VNSALDGRVRALVSLFSRRIKTLDLDITLCSRHQPTGHFVNNFIDQFHFVS 60
V+ A DG+++ + + L +I LCS Q TG D F VS
Sbjct: 439 VSGAYDGKIKVWDLQAALDPRALSSEICLCSLVQHTGRVFRLQFDDFQIVS 489
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 212 VNSALDGRVRALVSLFSRRIKTLDLDITLCSRHQPTGHFVNNFIDQFHFVS 60
V+ A DG+++ + + L +I LCS Q TG D F VS
Sbjct: 439 VSGAYDGKIKVWDLQAALDPRALSSEICLCSLVQHTGRVFRLQFDDFQIVS 489
>Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 585 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 619
>Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 585 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 619
>AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492690-1|AAM49742.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 571 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 605
>AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm
transmembrane protein protein.
Length = 661
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAF 251
GF+ ++ EG D VE V+ +RL++ Y F
Sbjct: 585 GFSCECDDGFEGLDCNVEIAWSSVMTNRLMKNYEF 619
>Z73911-4|CAA98141.2| 625|Caenorhabditis elegans Hypothetical
protein T12A7.1 protein.
Length = 625
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 36 TGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDI 215
+G + +DT L EV+YEV +L G ++ GF P + + DS + D
Sbjct: 536 SGGYLNTDTIMENLAREVLYEVPDQLT----GYMKRRGFTPKSRDDPWQRDSPPDE-YDP 590
Query: 216 VLNHRLVETYA 248
++++ L T A
Sbjct: 591 IMDNILSSTQA 601
>U28738-14|AAA68316.2| 129|Caenorhabditis elegans Hypothetical
protein T28D9.1 protein.
Length = 129
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 75 LVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 206
++DE E G Q + E AEEAD+ D AVE+G
Sbjct: 33 VIDEKTSEQNGEKTEETQAEATEEKNETEAEEADK--DKAVENG 74
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 247 PSVQEILHIVSKTIC 291
P+ +EI+H+VS T+C
Sbjct: 686 PTAKEIIHLVSDTVC 700
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 247 PSVQEILHIVSKTIC 291
P+ +EI+H+VS T+C
Sbjct: 686 PTAKEIIHLVSDTVC 700
>Z83223-6|CAB05719.1| 884|Caenorhabditis elegans Hypothetical
protein E01G4.6 protein.
Length = 884
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 185 RALVSLFSRRIKTLDLDITLCSRHQPTGHFVNNFIDQFHFVSVREHL 45
+A + L +I D + LC+ P+ ++ FI H S HL
Sbjct: 758 KACLELGRNKIAVTDSEEALCNTEIPSTAAIDEFISSEHVRSQSNHL 804
>Z82070-4|CAB04913.2| 227|Caenorhabditis elegans Hypothetical
protein W04E12.4 protein.
Length = 227
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 66 KMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGV 209
K+++ DE+I + + + D ++ S E+D+GTDS +ES +
Sbjct: 130 KIEMEDEIIGQW---VADDSDNDENVKNSPTSEPESDDGTDSDLESEI 174
>Z81538-6|CAB04387.1| 884|Caenorhabditis elegans Hypothetical
protein E01G4.6 protein.
Length = 884
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 185 RALVSLFSRRIKTLDLDITLCSRHQPTGHFVNNFIDQFHFVSVREHL 45
+A + L +I D + LC+ P+ ++ FI H S HL
Sbjct: 758 KACLELGRNKIAVTDSEEALCNTEIPSTAAIDEFISSEHVRSQSNHL 804
>Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 162 AEEADEGTDSAVESGVDIVL 221
+E +DEGT+S+ +GVD V+
Sbjct: 524 SENSDEGTNSSSTTGVDTVV 543
>Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 162 AEEADEGTDSAVESGVDIVL 221
+E +DEGT+S+ +GVD V+
Sbjct: 524 SENSDEGTNSSSTTGVDTVV 543
>AF005246-1|AAB95119.1| 556|Caenorhabditis elegans
voltage-dependent potassium channelalpha subunit
protein.
Length = 556
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 162 AEEADEGTDSAVESGVDIVL 221
+E +DEGT+S+ +GVD V+
Sbjct: 522 SENSDEGTNSSSTTGVDTVV 541
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,368,541
Number of Sequences: 27780
Number of extensions: 106046
Number of successful extensions: 353
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -