Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30191X
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.3  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    20   5.7  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    20   5.7  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    20   5.7  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    20   5.7  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    20   5.7  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    20   5.7  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    20   5.7  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    20   5.7  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    20   5.7  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    20   5.7  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    20   5.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   5.7  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    20   5.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    20   5.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   5.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   5.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   5.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    20   5.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 132  DIQIEGFNPSAEEADEGTDSAVESG 206
            D+++EGF       D  T S  +SG
Sbjct: 1050 DLEVEGFETKLVLEDGITSSGSDSG 1074


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 42 DEMFSDTYKMKLVDEVI 92
          +E++SD Y    +DE++
Sbjct: 20 EELYSDKYDYVNIDEIL 36


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 33  RTSRKRYSRSREREQKLY 50


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 128 LCSRHQPTGHFVNNFIDQFHF 66
           LC RHQ    F  + +D   F
Sbjct: 296 LCERHQKRYFFGRDSVDHVDF 316


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 266 RTSRKRYSRSREREQKLY 283


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 236 RNIRLRYKKSYTLSQKLY 289
           R  R RY +S    QKLY
Sbjct: 266 RTSRKRYSRSREREQKLY 283


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 206 SALDGRVRALVSLFSR 159
           SA +  +RAL SLFS+
Sbjct: 179 SARENELRALSSLFSK 194


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 206 SALDGRVRALVSLFSR 159
           SA +  +RAL SLFS+
Sbjct: 179 SARENELRALSSLFSK 194


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 206 SALDGRVRALVSLFSR 159
           SA +  +RAL SLFS+
Sbjct: 179 SARENELRALSSLFSK 194


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 42 DEMFSDTYKMKLVDEVI 92
          +E++SD Y    +DE++
Sbjct: 20 EELYSDKYDYVNIDEIL 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,370
Number of Sequences: 438
Number of extensions: 1273
Number of successful extensions: 22
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)