Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30191X
(300 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16640.1 68416.m02127 translationally controlled tumor family... 67 2e-12
At3g05540.1 68416.m00607 translationally controlled tumor family... 48 1e-06
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 34 0.015
At1g63100.1 68414.m07128 scarecrow transcription factor family p... 27 1.8
At5g51800.1 68418.m06423 expressed protein 27 3.1
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 27 3.1
At1g63910.1 68414.m07236 myb family transcription factor (MYB103... 27 3.1
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 27 3.1
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr... 26 5.4
At2g29810.1 68415.m03621 kelch repeat-containing F-box family pr... 26 5.4
At1g53210.1 68414.m06031 sodium/calcium exchanger family protein... 26 5.4
At5g49070.1 68418.m06072 beta-ketoacyl-CoA synthase family prote... 25 7.1
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 25 9.4
At4g13920.1 68417.m02154 disease resistance family protein / LRR... 25 9.4
At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domai... 25 9.4
At3g17800.1 68416.m02270 expressed protein 25 9.4
At1g50420.1 68414.m05651 scarecrow-like transcription factor 3 (... 25 9.4
At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protei... 25 9.4
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 66.9 bits (156), Expect = 2e-12
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Frame = +3
Query: 12 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 182
M +Y+D++TGDE+ SD++ K ++ +++EV G+ VT D+ I G NPSAEE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59
Query: 183 TDSAVESGVDIVLNHRLVETYAFGTRNPTHCLKNYM 290
D + + VDIV RL E + + +K Y+
Sbjct: 60 VDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYI 95
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 48.0 bits (109), Expect = 1e-06
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +3
Query: 12 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 185
M +Y+DI+TGDE+ SD++ K ++ G L ++EG NPS EE DEG
Sbjct: 1 MLVYQDILTGDELLSDSFPYKEIE------NGML-------WEVEGKNPSGEEGGEDEGV 47
Query: 186 DSAVESGVDIVLNHRLVETYAFGTRNPTHCLKNYM 290
D VDI+ RL E +F + +K Y+
Sbjct: 48 DDQAVKVVDIIDTFRLQEQPSFDKKQFVMFMKRYI 82
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 34.3 bits (75), Expect = 0.015
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 39 GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 206
G+ S K +++D V+ +T G +T +G+ EGF P+AEEAD+G S + G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292
>At1g63100.1 68414.m07128 scarecrow transcription factor family
protein similar to GI:1497987 from [Arabidopsis
thaliana] (Cell (1996) In press)
Length = 658
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 78 VDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGT 257
VD VI E+ G GD +E P+A + G S S L+HR+ E G+
Sbjct: 189 VDSVITELAGI------GDKDVESSLPAAVKEASGGSSTSASSESRSLSHRVPEP-TNGS 241
Query: 258 RNP 266
RNP
Sbjct: 242 RNP 244
>At5g51800.1 68418.m06423 expressed protein
Length = 972
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 6 IKMKIYKDIITGDEMFSDTYKMKLVD--EVIYEVTGRLVTR 122
++ +YKD+ G E+F +L+D + Y++ G +++R
Sbjct: 540 LRPDVYKDLPQGKELFFSISSTELLDCRAITYDIIGPIMSR 580
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 245 VCFD*PVVQDYVNSALDGRVRALVSLFSRRIKTLDL 138
V F P+V ++AL+ +R L LF + T+DL
Sbjct: 369 VAFPIPIVLPMQSTALEAEIRHLHRLFGSLLTTMDL 404
>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 370
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 122 SRHQPTGHFVNNFIDQFHFVSVREHLITSDNVLIDLHFDG 3
SRHQP+ V D + E T+ + + +LHFDG
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDG 163
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 147 GFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFG 254
GF P + A+EG S ++ +D + H TY G
Sbjct: 118 GFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVG 153
>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1164
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 27 DIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGD 134
D + G F D YK KL D + + + QGD
Sbjct: 861 DSMIGSGGFGDVYKAKLADGSVVAIKKLIQVTGQGD 896
>At2g29810.1 68415.m03621 kelch repeat-containing F-box family
protein contains Pfam PF00646: F-box domain; contains
Pfam PF01344 : Kelch motif; similar to SKP1 interacting
partner 6 (GI:10716957) [Arabidopsis thaliana]
Length = 383
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 3 SIKMKIYKDIITGDEMFSDTYKMKLVDEVIYEVTG 107
S+ K Y+D+I+ E+F ++ + V+Y G
Sbjct: 56 SLISKAYRDLISSPELFQTRSRLGFTEPVLYTSIG 90
>At1g53210.1 68414.m06031 sodium/calcium exchanger family protein /
calcium-binding EF hand family protein contains Pfam
profiles: PF01699 sodium/calcium exchanger protein,
PF00036 EF hand
Length = 585
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 86 FIDQFHFVSVREHLITSDN 30
F+D FH + REH + DN
Sbjct: 392 FLDNFHVQTKREHALLGDN 410
>At5g49070.1 68418.m06072 beta-ketoacyl-CoA synthase family protein
similar to very-long-chain fatty acid condensing enzyme
CUT1 [GI:5001734], beta-ketoacyl-CoA synthase
[Simmondsia chinensis][GI:1045614]
Length = 464
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 152 KTLDLDITLCSRHQPTGHFVNNFIDQFHFVS 60
+++D+ IT CS H P+ I++FH S
Sbjct: 145 RSIDILITNCSLHSPSPSLSAMVINKFHMRS 175
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 71 HFVSVREHLITSDNVLIDLHF 9
H V+V EH T+D V+I ++F
Sbjct: 648 HLVAVMEHWKTTDLVIIPIYF 668
>At4g13920.1 68417.m02154 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 891
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -2
Query: 218 DYVNSALDGRVRALVSLFS-RRIKTLDLDIT--LCSRHQPTGHF 96
D NS L+GR+R+ SLF + +++LDL C+ +G+F
Sbjct: 85 DLGNSDLNGRLRSNSSLFRLQHLQSLDLSYNDLSCTLPDSSGNF 128
>At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 623
Score = 25.0 bits (52), Expect = 9.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 63 YKMKLVDEVIYEVTGRLVTRAQGDIQIE---GFNPSAEEADEGTDSAVESGVDIVLNHRL 233
Y K VD+ + V ++G I++ GF + +E+D D+ V++G + L
Sbjct: 479 YPKKFVDDYLRMVMACAEKDSEGVIEMSRRLGFL-TGDESDVMLDAHVQAGFIVGLPFAE 537
Query: 234 VETYAFGTRNPTHCLKN 284
YAF T N + N
Sbjct: 538 PGGYAFRTNNIASSISN 554
>At3g17800.1 68416.m02270 expressed protein
Length = 421
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 138 QIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVE 239
Q+E + + DSA G DIVL R+ E
Sbjct: 123 QLEQLQTDRDSQGQNKDSASVPGTDIVLYRRIAE 156
>At1g50420.1 68414.m05651 scarecrow-like transcription factor 3
(SCL3) identical to GB:AAD24404 GI:4580515 from
[Arabidopsis thaliana] (Plant J. 18 (1), 111-119 (1999))
Length = 482
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 168 EADEGTDSAVESGVDIVLNHRLVETYAFGTRNPTHCLKN 284
+ D GT S S + + L + +P HCLK+
Sbjct: 6 QEDNGTSSVASSPLQVFSTMSLNRPTLLASSSPFHCLKD 44
>At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protein
contains Pfam profiles: PF01411 tRNA synthetases class
II (A), PF02272 DHHA1 domain
Length = 1003
Score = 25.0 bits (52), Expect = 9.4
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 33 ITGDEMFS--DTYKMKL-VDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSA 194
++GD+ F DTY L + +++ E G LV ++GFN + EEA E + SA
Sbjct: 458 LSGDDAFILWDTYGFPLDLTQLMAEERGLLV-------DVDGFNKAMEEARERSRSA 507
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,985,625
Number of Sequences: 28952
Number of extensions: 101639
Number of successful extensions: 271
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -