Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30190
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 109 3e-25
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 109 3e-25
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 109 3e-25
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 38 0.002
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 3.5
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 8.0
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 8.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 8.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 8.0
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 109 bits (263), Expect = 3e-25
Identities = 50/86 (58%), Positives = 61/86 (70%)
Frame = +1
Query: 445 QKQPT*GCCRFYSSSHCA*PSCQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 624
+ P GC F + QIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E
Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387
Query: 625 NPKSIKSGDAAIVNLVPSKPLCVESF 702
+PK +KSGDA I +VPSKP+CVE+F
Sbjct: 388 SPKFVKSGDACIAKMVPSKPMCVEAF 413
Score = 42.3 bits (95), Expect = 7e-05
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SKN+PP G A FTAQVI+LNHP
Sbjct: 327 SKNDPPMGCASFTAQVIILNHP 348
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 109 bits (263), Expect = 3e-25
Identities = 50/86 (58%), Positives = 61/86 (70%)
Frame = +1
Query: 445 QKQPT*GCCRFYSSSHCA*PSCQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 624
+ P GC F + QIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E
Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387
Query: 625 NPKSIKSGDAAIVNLVPSKPLCVESF 702
+PK +KSGDA I +VPSKP+CVE+F
Sbjct: 388 SPKFVKSGDACIAKMVPSKPMCVEAF 413
Score = 42.3 bits (95), Expect = 7e-05
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SKN+PP G A FTAQVI+LNHP
Sbjct: 327 SKNDPPMGCASFTAQVIILNHP 348
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 109 bits (263), Expect = 3e-25
Identities = 50/86 (58%), Positives = 61/86 (70%)
Frame = +1
Query: 445 QKQPT*GCCRFYSSSHCA*PSCQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 624
+ P GC F + QIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E
Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387
Query: 625 NPKSIKSGDAAIVNLVPSKPLCVESF 702
+PK +KSGDA I +VPSKP+CVE+F
Sbjct: 388 SPKFVKSGDACIAKMVPSKPMCVEAF 413
Score = 42.3 bits (95), Expect = 7e-05
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SKN+PP G A FTAQVI+LNHP
Sbjct: 327 SKNDPPMGCASFTAQVIILNHP 348
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 514 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 693
++ GY+ V+ HTA FA++ K+D +T + ++ P G I L P+C+
Sbjct: 573 LTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCM 631
Query: 694 ESFQ 705
E F+
Sbjct: 632 ERFE 635
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 326 YPVHYAHFRSWLAEPHQVDGKRQL---FPPNTMLITISFSIGSKNNPPK 463
YP HYA F + + +D K +L F P L+ + SKNN P+
Sbjct: 639 YPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGV-LPAASKNNLPE 686
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +2
Query: 245 SSSCPRSSAYLPAQIRSHQIGYIQICNYPVHYAHFRSWL 361
+ S P+ Y+P R H I + +C H F WL
Sbjct: 213 AKSAPKDDFYVPRFTRGHGISKLGLCPICSHQGEF-IWL 250
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 659 MAASPDLMDFGLTSVDLPVRRSTFS 585
++ +PDL D L+SVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +2
Query: 329 PVHYAHFRSWLAEPHQVDGKRQLFPPNTMLITISFSIGSKNNPPKGAADFTAQVIVLNHP 508
P + F +WL + +G R L T+S SI +++ D + +++++
Sbjct: 607 PSTFWEFTTWLCKHDATEGTRVLLDK-----TVSGSISAEDVLEH--LDSSQDDVLIDYL 659
Query: 509 VKSQTVTHQCWIATL 553
VKS +VTH+ + L
Sbjct: 660 VKSNSVTHRALLLKL 674
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 392 QLFPPNTMLITISFSIGSKNNPPKGAADF 478
++ PP LI +S+ + N P G DF
Sbjct: 24 EILPPRFTLIVSFYSMNTSENDPDGHYDF 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,786
Number of Sequences: 5004
Number of extensions: 67401
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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