BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30190 (706 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 109 3e-25 SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 109 3e-25 SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 109 3e-25 SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 38 0.002 SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 3.5 SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 8.0 SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 8.0 SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 8.0 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 8.0 >SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual Length = 460 Score = 109 bits (263), Expect = 3e-25 Identities = 50/86 (58%), Positives = 61/86 (70%) Frame = +1 Query: 445 QKQPT*GCCRFYSSSHCA*PSCQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 624 + P GC F + QIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387 Query: 625 NPKSIKSGDAAIVNLVPSKPLCVESF 702 +PK +KSGDA I +VPSKP+CVE+F Sbjct: 388 SPKFVKSGDACIAKMVPSKPMCVEAF 413 Score = 42.3 bits (95), Expect = 7e-05 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = +2 Query: 443 SKNNPPKGAADFTAQVIVLNHP 508 SKN+PP G A FTAQVI+LNHP Sbjct: 327 SKNDPPMGCASFTAQVIILNHP 348 >SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual Length = 460 Score = 109 bits (263), Expect = 3e-25 Identities = 50/86 (58%), Positives = 61/86 (70%) Frame = +1 Query: 445 QKQPT*GCCRFYSSSHCA*PSCQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 624 + P GC F + QIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387 Query: 625 NPKSIKSGDAAIVNLVPSKPLCVESF 702 +PK +KSGDA I +VPSKP+CVE+F Sbjct: 388 SPKFVKSGDACIAKMVPSKPMCVEAF 413 Score = 42.3 bits (95), Expect = 7e-05 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = +2 Query: 443 SKNNPPKGAADFTAQVIVLNHP 508 SKN+PP G A FTAQVI+LNHP Sbjct: 327 SKNDPPMGCASFTAQVIILNHP 348 >SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual Length = 460 Score = 109 bits (263), Expect = 3e-25 Identities = 50/86 (58%), Positives = 61/86 (70%) Frame = +1 Query: 445 QKQPT*GCCRFYSSSHCA*PSCQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 624 + P GC F + QIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387 Query: 625 NPKSIKSGDAAIVNLVPSKPLCVESF 702 +PK +KSGDA I +VPSKP+CVE+F Sbjct: 388 SPKFVKSGDACIAKMVPSKPMCVEAF 413 Score = 42.3 bits (95), Expect = 7e-05 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = +2 Query: 443 SKNNPPKGAADFTAQVIVLNHP 508 SKN+PP G A FTAQVI+LNHP Sbjct: 327 SKNDPPMGCASFTAQVIILNHP 348 >SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 37.5 bits (83), Expect = 0.002 Identities = 19/64 (29%), Positives = 33/64 (51%) Frame = +1 Query: 514 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 693 ++ GY+ V+ HTA FA++ K+D +T + ++ P G I L P+C+ Sbjct: 573 LTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCM 631 Query: 694 ESFQ 705 E F+ Sbjct: 632 ERFE 635 >SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 991 Score = 26.6 bits (56), Expect = 3.5 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = +2 Query: 326 YPVHYAHFRSWLAEPHQVDGKRQL---FPPNTMLITISFSIGSKNNPPK 463 YP HYA F + + +D K +L F P L+ + SKNN P+ Sbjct: 639 YPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGV-LPAASKNNLPE 686 >SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 344 Score = 25.4 bits (53), Expect = 8.0 Identities = 12/39 (30%), Positives = 17/39 (43%) Frame = +2 Query: 245 SSSCPRSSAYLPAQIRSHQIGYIQICNYPVHYAHFRSWL 361 + S P+ Y+P R H I + +C H F WL Sbjct: 213 AKSAPKDDFYVPRFTRGHGISKLGLCPICSHQGEF-IWL 250 >SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 268 Score = 25.4 bits (53), Expect = 8.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -3 Query: 659 MAASPDLMDFGLTSVDLPVRRSTFS 585 ++ +PDL D L+SVD P++ +T S Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51 >SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 910 Score = 25.4 bits (53), Expect = 8.0 Identities = 19/75 (25%), Positives = 36/75 (48%) Frame = +2 Query: 329 PVHYAHFRSWLAEPHQVDGKRQLFPPNTMLITISFSIGSKNNPPKGAADFTAQVIVLNHP 508 P + F +WL + +G R L T+S SI +++ D + +++++ Sbjct: 607 PSTFWEFTTWLCKHDATEGTRVLLDK-----TVSGSISAEDVLEH--LDSSQDDVLIDYL 659 Query: 509 VKSQTVTHQCWIATL 553 VKS +VTH+ + L Sbjct: 660 VKSNSVTHRALLLKL 674 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 25.4 bits (53), Expect = 8.0 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +2 Query: 392 QLFPPNTMLITISFSIGSKNNPPKGAADF 478 ++ PP LI +S+ + N P G DF Sbjct: 24 EILPPRFTLIVSFYSMNTSENDPDGHYDF 52 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,054,786 Number of Sequences: 5004 Number of extensions: 67401 Number of successful extensions: 193 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 193 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 327172622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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