Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30190
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 95 6e-20
03_01_0547 + 4093196-4093657,4094267-4095148 95 6e-20
03_01_0544 + 4082528-4082989,4083585-4084466 95 6e-20
03_01_0543 + 4076981-4077442,4078145-4079026 95 6e-20
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 32 0.39
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 31 1.2
01_05_0589 + 23459847-23460344,23460493-23461296 31 1.2
07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783... 29 2.7
05_06_0124 - 25822176-25822633,25822738-25825420 29 2.7
03_06_0422 + 33818887-33819996 29 2.7
02_05_0801 + 31824548-31825064,31825231-31826171 29 2.7
01_06_0017 + 25592255-25593730 29 3.6
01_05_0587 + 23452275-23453759 29 3.6
01_06_0018 + 25609571-25611061 29 4.8
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 28 6.3
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 94.7 bits (225), Expect = 6e-20
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMV 399
Query: 691 VESF 702
VE+F
Sbjct: 400 VETF 403
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK++P K AA FT+QVI++NHP
Sbjct: 317 SKDDPAKEAASFTSQVIIMNHP 338
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 94.7 bits (225), Expect = 6e-20
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMV 399
Query: 691 VESF 702
VE+F
Sbjct: 400 VETF 403
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK++P K AA FT+QVI++NHP
Sbjct: 317 SKDDPAKEAASFTSQVIIMNHP 338
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 94.7 bits (225), Expect = 6e-20
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMV 399
Query: 691 VESF 702
VE+F
Sbjct: 400 VETF 403
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK++P K AA FT+QVI++NHP
Sbjct: 317 SKDDPAKEAASFTSQVIIMNHP 338
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 94.7 bits (225), Expect = 6e-20
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMV 399
Query: 691 VESF 702
VE+F
Sbjct: 400 VETF 403
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK++P K AA FT+QVI++NHP
Sbjct: 317 SKDDPAKEAASFTSQVIIMNHP 338
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +1
Query: 559 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESF 702
++ +I ++++TGK+++ P+ + S A++ + K +CVE F
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEF 624
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Frame = +1
Query: 523 GYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-------IKSGDAAIVNLVPSK 681
GY VL H+ C+ ++ E++D + K + K +K+G + + +
Sbjct: 337 GYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNN 396
Query: 682 PLCVESF 702
+C+E+F
Sbjct: 397 LICIENF 403
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 485 QVIVLNHPVKSQTVTHQCWIATLPTLPA 568
QV+VLNHP VTH W +TL + A
Sbjct: 299 QVLVLNHPAVGVFVTHCGWNSTLEAVSA 326
>07_03_0724 +
20975942-20976867,20977397-20977476,20977976-20978370,
20988410-20989444
Length = 811
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = -3
Query: 308 SQSDGTVFEQEGTLKNEGKKKNPWLLEVNFLGWVQTALPIP*LLWLMKMVTNQK*SKVPA 129
+Q GT+ E G+L N N L+ NF G ++ +L L +MK+ N ++PA
Sbjct: 388 NQLTGTIPESFGSLMN---LTNLVLMANNFSGEIRASLAQLPSLVIMKLFENNLSGQLPA 444
Query: 128 ELYRQQYFI 102
EL + F+
Sbjct: 445 ELGKHSPFL 453
>05_06_0124 - 25822176-25822633,25822738-25825420
Length = 1046
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = -3
Query: 308 SQSDGTVFEQEGTLKNEGKKKNPWLLEVNFLGWVQTALPIP*LLWLMKMVTNQK*SKVPA 129
+Q GT+ E G+L N N L+ NF G + +L L +MK+ N ++PA
Sbjct: 305 NQLTGTIPESFGSLMN---LTNLALMTNNFSGEIPASLAQLPSLVIMKLFENNLTGQIPA 361
Query: 128 ELYRQQYFI 102
EL + F+
Sbjct: 362 ELGKHSPFL 370
>03_06_0422 + 33818887-33819996
Length = 369
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 379 GREAATIPTKHNANNNFIFDWIQKQPT*GCCRFYSSSHCA*PSCQISNGYTPVLD 543
G EA +P +H ++ I W++ + CRF + + C+ + G V D
Sbjct: 265 GTEAKEMPCQHKFHSQCILPWLELHSSCPICRFQLPTEESKNPCESAGGIVSVND 319
>02_05_0801 + 31824548-31825064,31825231-31826171
Length = 485
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 470 ADFTAQVIVLNHPVKSQTVTHQCWIATLPTLPA 568
A + Q VLNHP +TH W +TL +L A
Sbjct: 360 ASWCPQQDVLNHPAVGAFLTHSGWNSTLESLAA 392
>01_06_0017 + 25592255-25593730
Length = 491
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 485 QVIVLNHPVKSQTVTHQCWIATLPTLPA 568
Q+++LNHP VTH W +TL + A
Sbjct: 355 QMLILNHPAVGGFVTHCGWNSTLEAVTA 382
>01_05_0587 + 23452275-23453759
Length = 494
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 485 QVIVLNHPVKSQTVTHQCWIATLPTLPA 568
Q+++LNHP VTH W +TL + A
Sbjct: 358 QMLILNHPAVGGFVTHCGWNSTLEAVSA 385
>01_06_0018 + 25609571-25611061
Length = 496
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 485 QVIVLNHPVKSQTVTHQCWIATLPTLPA 568
QV+VLNHP VTH W + L + A
Sbjct: 360 QVLVLNHPAVGGFVTHCGWNSVLEAVSA 387
>11_04_0340 - 16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 419 ITISFSIGSKNNPPKGAADFTAQV---IVLNHPVKSQTVTHQCWIATLPTLP 565
+ IS S+G +N G D T +V++HP+ + I+ +PTLP
Sbjct: 984 LQISTSLGDRNESLSGLHDLTIHDCPRLVVSHPLPFSAQMRRFSISGIPTLP 1035
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,516,932
Number of Sequences: 37544
Number of extensions: 467327
Number of successful extensions: 1253
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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