Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30190
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                103   1e-22
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           33   0.17 
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_14545| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10)          29   4.9  
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)          29   4.9  
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)                29   4.9  
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  103 bits (248), Expect = 1e-22
 Identities = 43/64 (67%), Positives = 55/64 (85%)
 Frame = +1

Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
           +I  GY+PVLDCHTAHIACKF ++ EK+DRR+GK  E NPK IK+GDAA+V ++PSKP+C
Sbjct: 211 EIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMC 270

Query: 691 VESF 702
           VE+F
Sbjct: 271 VETF 274



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 446 KNNPPKGAADFTAQVIVLNHP 508
           KNNPPK    FTAQVIV+NHP
Sbjct: 189 KNNPPKPCKSFTAQVIVMNHP 209


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 592 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESF 702
           +D++TGK  +  P+ IK    AI  L     +C+E F
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKF 532


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +1

Query: 556 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 684
           HIA K  E+K   D ++ K+ ++ PK++ SGD    ++VP++P
Sbjct: 74  HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112


>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -3

Query: 416 ALCLVGIVAASRPPGEAQLTSYENVHNGRGNYRFGYSQSDGTVFEQEGTLKNEGKKKNPW 237
           A+ + G++A+ +   + +L+    V  G G +R+    S G    +EG+L  E  KK  W
Sbjct: 322 AVAVAGVLASLKIT-KTRLSDQRIVFQGAGRHRYCKPASPG---HEEGSLTEEQAKKKIW 377

Query: 236 LLE 228
           L++
Sbjct: 378 LVD 380


>SB_14545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -2

Query: 204 DGVTYTVTF---VADEDGYQPEIEQGPGGAVPSAILHSL 97
           DG T+T      + D+DG+ PE+   PG  + S++LHS+
Sbjct: 56  DGTTHTPNVCINLTDDDGFVPELPSLPG--MKSSLLHSM 92


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 644  DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQS 540
            DL +F  G+T++ LP   ST  +    NLQ  W +WQS
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493


>SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10)
          Length = 98

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 642 LDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQHW 532
           L G W  F R    +V+F+ D+ ++    G +  +HW
Sbjct: 8   LGGGWTVFQRRQDGSVDFWRDWAEYKNGFGDLQGEHW 44


>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 642 LDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQHW 532
           L G W  F R    +V+F+ D+ ++    G +  +HW
Sbjct: 250 LGGGWTVFQRRQDGSVDFWRDWAEYKNGFGDLQGEHW 286


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 577 LQICRQCGQCGNPTLVCNRLRFDRMVKHNDLSCKICS 467
           L +C QCGQC +P   C  ++ ++M+      C  C+
Sbjct: 767 LIVCSQCGQCFHP--YCVGVKVNKMILSKGWRCLDCT 801


>SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)
          Length = 168

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 642 LDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQHW 532
           L G W  F R    +V+F+ D+ ++    G +  +HW
Sbjct: 8   LGGGWTVFQRRQDGSVDFWRDWAEYKNGFGDLQGEHW 44


>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
          Length = 726

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 577 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 705
           EI     R TG++TE+N  ++ SG+  I  +V +   C+   Q
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQ 297


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 517 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 684
           +N   P+L+  T  +A        K D  T  + +VN KS   G  +I+    P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,056,066
Number of Sequences: 59808
Number of extensions: 525454
Number of successful extensions: 1388
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)