Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30190
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 116 2e-26
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 116 2e-26
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 116 2e-26
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 29 2.4
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 5.7
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 5.7
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 5.7
Z73972-3|CAA98259.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.5
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 116 bits (279), Expect = 2e-26
Identities = 52/64 (81%), Positives = 56/64 (87%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLC
Sbjct: 318 QISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLC 377
Query: 691 VESF 702
VESF
Sbjct: 378 VESF 381
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK +P K A F AQVI++NHP
Sbjct: 295 SKQDPAKEARTFHAQVIIMNHP 316
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 116 bits (279), Expect = 2e-26
Identities = 52/64 (81%), Positives = 56/64 (87%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLC
Sbjct: 352 QISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLC 411
Query: 691 VESF 702
VESF
Sbjct: 412 VESF 415
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK +P K A F AQVI++NHP
Sbjct: 329 SKQDPAKEARTFHAQVIIMNHP 350
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 116 bits (279), Expect = 2e-26
Identities = 52/64 (81%), Positives = 56/64 (87%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLC
Sbjct: 352 QISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLC 411
Query: 691 VESF 702
VESF
Sbjct: 412 VESF 415
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK +P K A F AQVI++NHP
Sbjct: 329 SKQDPAKEARTFHAQVIIMNHP 350
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 440 GSKNNPPKGAAD-FTAQVIVLNHP 508
G K NPP+GAAD F +V+ L+ P
Sbjct: 277 GEKANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 440 GSKNNPPKGAAD-FTAQVIVLNHP 508
G K NPP+GAAD F +V+ L+ P
Sbjct: 277 GEKANPPQGAADKFHVKVVTLHEP 300
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 538 LDCHTAHIACKFAEIKEKVDRRTGKSTE 621
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 538 LDCHTAHIACKFAEIKEKVDRRTGKSTE 621
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 538 LDCHTAHIACKFAEIKEKVDRRTGKSTE 621
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z73972-3|CAA98259.1| 305|Caenorhabditis elegans Hypothetical
protein F15H10.6 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 109 YC*RYSSAGTLLYFWLVTIFISHKSHGIGN 198
+C A T+LY ++V++FIS K+H + +
Sbjct: 2 WCVALVRAFTMLYLFIVSLFISSKAHHLAH 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,119,042
Number of Sequences: 27780
Number of extensions: 397949
Number of successful extensions: 975
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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