Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30190
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 93 2e-19
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 93 2e-19
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 93 2e-19
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 93 2e-19
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 91 9e-19
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 40 0.002
At2g21370.1 68415.m02543 xylulose kinase, putative similar to xy... 34 0.080
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 34 0.11
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.3
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.3
At5g57460.1 68418.m07181 expressed protein 28 5.2
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 5.2
At5g60820.1 68418.m07630 zinc finger (C3HC4-type RING finger) fa... 28 6.9
At5g53910.1 68418.m06708 (S)-2-hydroxy-acid oxidase, peroxisomal... 28 6.9
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 28 6.9
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 27 9.2
At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.2
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 93.1 bits (221), Expect = 2e-19
Identities = 39/64 (60%), Positives = 50/64 (78%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMV 399
Query: 691 VESF 702
VE+F
Sbjct: 400 VETF 403
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK++P KGAA+FT+QVI++NHP
Sbjct: 317 SKDDPAKGAANFTSQVIIMNHP 338
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 93.1 bits (221), Expect = 2e-19
Identities = 39/64 (60%), Positives = 50/64 (78%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMV 399
Query: 691 VESF 702
VE+F
Sbjct: 400 VETF 403
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK++P KGAA+FT+QVI++NHP
Sbjct: 317 SKDDPAKGAANFTSQVIIMNHP 338
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 93.1 bits (221), Expect = 2e-19
Identities = 39/64 (60%), Positives = 50/64 (78%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMV 399
Query: 691 VESF 702
VE+F
Sbjct: 400 VETF 403
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK++P KGAA+FT+QVI++NHP
Sbjct: 317 SKDDPAKGAANFTSQVIIMNHP 338
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 93.1 bits (221), Expect = 2e-19
Identities = 39/64 (60%), Positives = 50/64 (78%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMV 399
Query: 691 VESF 702
VE+F
Sbjct: 400 VETF 403
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +2
Query: 443 SKNNPPKGAADFTAQVIVLNHP 508
SK++P KGAA+FT+QVI++NHP
Sbjct: 317 SKDDPAKGAANFTSQVIIMNHP 338
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 90.6 bits (215), Expect = 9e-19
Identities = 38/64 (59%), Positives = 50/64 (78%)
Frame = +1
Query: 511 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 690
QI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P+KP+
Sbjct: 6 QIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMV 65
Query: 691 VESF 702
VE++
Sbjct: 66 VEAY 69
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 523 GYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESF 702
GY +L H C+ E+K ++D +T K + +K+G A + + + +C+E F
Sbjct: 440 GYKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKF 499
>At2g21370.1 68415.m02543 xylulose kinase, putative similar to
xylulose kinase (Xylulokinase) [Bacillus subtilis]
Swiss-Prot:P39211
Length = 478
Score = 34.3 bits (75), Expect = 0.080
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -3
Query: 359 TSYENVHNGRGNYRFGYSQSDGTVFEQEGTLKNEGKKKNPWLLEVNFLGWVQT 201
T+YE ++ G FG S TV +++G +K +GK++ P ++ +GW +
Sbjct: 50 TNYEKLYLGMD---FGTSGGRFTVIDEQGEIKAQGKREYPPFMKEESMGWASS 99
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +1
Query: 547 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESF 702
H A A ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F
Sbjct: 586 HHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETF 637
>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 479
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +2
Query: 356 WLAEPHQVDGKRQLFPPNTMLITISFSIGSKNNPPKGAADFTAQVIVLNHPVKSQTVTHQ 535
W+ P V G + PP+ F I + N + A + Q VL+HP +TH
Sbjct: 326 WVIRPDLVAGDVPMLPPD-------FLIETANR--RMLASWCPQEKVLSHPAVGGFLTHS 376
Query: 536 CWIATLPTL 562
W +TL +L
Sbjct: 377 GWNSTLESL 385
>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 309
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +2
Query: 356 WLAEPHQVDGKRQLFPPNTMLITISFSIGSKNNPPKGAADFTAQVIVLNHPVKSQTVTHQ 535
W+ P V G + PP+ F I + N + A + Q VL+HP +TH
Sbjct: 156 WVIRPDLVAGDVPMLPPD-------FLIETANR--RMLASWCPQEKVLSHPAVGGFLTHS 206
Query: 536 CWIATLPTL 562
W +TL +L
Sbjct: 207 GWNSTLESL 215
>At5g57460.1 68418.m07181 expressed protein
Length = 646
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 419 LALCLVGIVAASRPPGEAQLTSYENVHNGRGNY-RFGYSQSDGTVFE 282
L L L G+ + PP EA +++ NV G Y +S T+ E
Sbjct: 300 LTLALAGLEVTTLPPAEATQSTHINVEGFEGQYGGIEFSNEQATIGE 346
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 568 KFAEIKEKVDRRTGKSTEVNPKSI 639
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At5g60820.1 68418.m07630 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 419
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 379 GREAATIPTKHNANNNFIFDWIQKQPT*GCCRF 477
G+E A +P +H ++ I W+ + T CRF
Sbjct: 382 GKEVAELPCRHKYHSECIVPWLGIRNTCPVCRF 414
>At5g53910.1 68418.m06708 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative contains Pfam
profile: PF00097 zinc finger, C3HC4 type (RING finger)
Length = 230
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 379 GREAATIPTKHNANNNFIFDWIQKQPT*GCCRF 477
GRE AT+ H +N I +W + + CRF
Sbjct: 182 GREVATLLCGHEFDNKCIMEWFKVRYNCPLCRF 214
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -3
Query: 407 LVGIVAASRPPGEAQLTSYENVHNGRGNYRFGYSQSDGTVFEQEGTLKNEGKKKNP 240
+VG+ R P E++ + Y+F + Q G ++E + L + K + P
Sbjct: 1067 VVGVGRDQRNPEESKSAPKTSYGFRNHEYKFTHQQERGNIYETQAGLNQDAKVERP 1122
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 273 YAEERGQEEESLAVRGKFSWVGPDGVTYTVTFVADEDGYQPEIEQ 139
Y E GQE LA+R V G V + E+G ++E+
Sbjct: 178 YKESAGQETVKLAIRALLEVVESGGKNIEVAVMTREEGVLKQLEE 222
>At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 489
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 356 WLAEPHQVDGKRQLFPPNTMLITISFSIGSKNNPPKGAADFTAQVIVLNHPVKSQTVTHQ 535
W+ P V G+ + PP+ ++ T S+ A + Q VL+HP +TH
Sbjct: 332 WVIRPDLVAGEEAMVPPDFLMETKDRSM---------LASWCPQEKVLSHPAIGGFLTHC 382
Query: 536 CWIATLPTL 562
W + L +L
Sbjct: 383 GWNSILESL 391
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,048
Number of Sequences: 28952
Number of extensions: 368491
Number of successful extensions: 1081
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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