Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30188
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 144 1e-35
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 144 1e-35
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 144 1e-35
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 29 1.0
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 29 1.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 1.8
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3... 28 1.8
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 27 3.1
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 144 bits (350), Expect = 1e-35
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 510 EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDK 689
EK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDK
Sbjct: 117 EKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDK 176
Query: 690 PILKAGRAYHKYKVKRNCWPYVRGV 764
P+LKAGRA+HKY+VKRNCWP RGV
Sbjct: 177 PLLKAGRAFHKYRVKRNCWPRTRGV 201
Score = 81.0 bits (191), Expect = 2e-16
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = +2
Query: 254 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 403
LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG
Sbjct: 31 LDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEG 80
Score = 67.7 bits (158), Expect = 2e-12
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +1
Query: 403 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLERK 516
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEK 118
Score = 42.3 bits (95), Expect = 8e-05
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +3
Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS 254
MGRVIRAQRK +G +F +HT+ RKGA +LR+
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRT 30
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 144 bits (350), Expect = 1e-35
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 510 EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDK 689
EK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDK
Sbjct: 117 EKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDK 176
Query: 690 PILKAGRAYHKYKVKRNCWPYVRGV 764
P+LKAGRA+HKY+VKRNCWP RGV
Sbjct: 177 PLLKAGRAFHKYRVKRNCWPRTRGV 201
Score = 81.0 bits (191), Expect = 2e-16
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = +2
Query: 254 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 403
LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG
Sbjct: 31 LDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEG 80
Score = 67.7 bits (158), Expect = 2e-12
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +1
Query: 403 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLERK 516
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEK 118
Score = 42.3 bits (95), Expect = 8e-05
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +3
Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS 254
MGRVIRAQRK +G +F +HT+ RKGA +LR+
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRT 30
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 144 bits (350), Expect = 1e-35
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 510 EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDK 689
EK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDK
Sbjct: 117 EKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDK 176
Query: 690 PILKAGRAYHKYKVKRNCWPYVRGV 764
P+LKAGRA+HKY+VKRNCWP RGV
Sbjct: 177 PLLKAGRAFHKYRVKRNCWPRTRGV 201
Score = 81.0 bits (191), Expect = 2e-16
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = +2
Query: 254 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 403
LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG
Sbjct: 31 LDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEG 80
Score = 67.7 bits (158), Expect = 2e-12
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +1
Query: 403 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLERK 516
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEK 118
Score = 42.3 bits (95), Expect = 8e-05
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +3
Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS 254
MGRVIRAQRK +G +F +HT+ RKGA +LR+
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRT 30
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 486 LRHSSNRHHISNFKSCFLSTINKLACVEPSGAMKSSFLVLN--LYGSRKCTTAKG 328
L SS HH+ +ST L ++ K+ F+VLN +Y S K + +G
Sbjct: 234 LNTSSESHHLLELLGLRISTFMSLGDIDKELISKTDFVVLNNAVYDSEKISFPEG 288
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +3
Query: 525 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 704
+ +L R++G+ A +I D K V+L SG ++ + ++ +G+V+ + + KA
Sbjct: 189 KAKLCRSAGSSARIIAF--DGKYAIVRLQSGEERKILDTSFATIGVVSNIYWQHRQLGKA 246
Query: 705 GRA 713
GR+
Sbjct: 247 GRS 249
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -3
Query: 670 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSP 518
PAT+P F P F +L SGL V+ +P+ + +P
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNP 296
>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 337 CCTLPRSIQVQDKEGALHCSRRLYTGQFVYCGKKATLEVGNVMPVGAM-PEGTIVCNLER 513
C TLP + + E +++ Q +Y G+K + + N + + P G + + ++
Sbjct: 61 CITLPNETTIAEAE-----LKKIREFQNIY-GEKNVILLSNSIGTRKLDPTGELAAHFQQ 114
Query: 514 KWVIEVVWHVPLE 552
KW I VV H L+
Sbjct: 115 KWNIPVVRHSKLK 127
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 681 IDKPILKAGRAYHKYKVKRNCWPYVRG 761
++KPI K+K K +CW +RG
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRG 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,570
Number of Sequences: 5004
Number of extensions: 73630
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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