Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30188
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 134 1e-31
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.26
11_06_0032 + 19432305-19432510,19433390-19434326,19434880-194349... 30 1.8
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814... 30 1.8
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.2
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 5.6
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 29 5.6
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 28 9.8
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 9.8
02_05_0634 + 30513920-30514136,30514674-30514717,30515547-305155... 28 9.8
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 134 bits (323), Expect = 1e-31
Identities = 59/83 (71%), Positives = 70/83 (84%)
Frame = +3
Query: 516 MGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPI 695
+GDRG ARASG++A VI HNPD +R+KLPSGAKK++PSS R M+G VAGGGR +KP+
Sbjct: 120 VGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPM 179
Query: 696 LKAGRAYHKYKVKRNCWPYVRGV 764
LKAG AYHKY+VKRNCWP VRGV
Sbjct: 180 LKAGNAYHKYRVKRNCWPKVRGV 202
Score = 82.2 bits (194), Expect = 4e-16
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +2
Query: 254 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 403
LD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P+++K +KELF+A EG
Sbjct: 32 LDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEG 81
Score = 64.9 bits (151), Expect = 7e-11
Identities = 23/36 (63%), Positives = 33/36 (91%)
Frame = +1
Query: 403 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 510
+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E
Sbjct: 82 MYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVE 117
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = +3
Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS 254
MGRVIRAQRKGAGSVF SHT RKG + RS
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRS 31
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.26
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 668 WRWTY*QTYFESWKGIPQVQG 730
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>11_06_0032 +
19432305-19432510,19433390-19434326,19434880-19434975,
19435518-19435654,19435888-19436056
Length = 514
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 776 QGSWHTTYIWPAVTFDLVLVVC----PSSFQNRFVNTSTSSNNTDHAS 645
Q +W T W + F L+LV+C PS R+ + ++++ D S
Sbjct: 427 QSAWIITAFWDVLAFVLLLVICYLWAPSQSSQRYAYSGEAADDDDEES 474
>03_06_0376 +
33479776-33479958,33481055-33481236,33481345-33481469,
33481858-33482057,33482629-33482762,33483095-33483158,
33483764-33484441,33484723-33484839
Length = 560
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 158 YDPSLKDFIKSN*LNVGLSFSLYISYPVIKFKD 60
YD L D K+ L + LS +Y+ PVIKFKD
Sbjct: 366 YDCILDDETKNIFLPIHLSEEVYVGDPVIKFKD 398
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 3.2
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 545 LWKLRHCDWT 574
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 668 WRWTY*QTYFESWKGIPQVQG 730
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 545 GTCQTTSITHFLSRLHTMVPSGIAPTGITFPTSRVAFF 432
G C+ + L L MV SGIAPT T+ FF
Sbjct: 208 GWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFF 245
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 27.9 bits (59), Expect = 9.8
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Frame = -2
Query: 713 CPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIV----SNHSGEVSR 546
CPS ++ +++T + +H S +QN L R + SC IR++ S +G +S
Sbjct: 1100 CPSDIVLKWFDSTTMEDLVNHLSSNGYQNDLLHRAKVASCLCIIRLLTKLSSGDTGSLSF 1159
Query: 545 GTCQ-----TTSITHFLSRLHTMVPSG--IAPTG 465
+ ++ +TH + T++ G IA TG
Sbjct: 1160 SLVKKIQLISSKLTHMCAGARTLLCGGPRIASTG 1193
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 576 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 695
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>02_05_0634 +
30513920-30514136,30514674-30514717,30515547-30515595,
30515663-30515835
Length = 160
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 142 KIL*NLINST*D*AFRYIFHIRL*NLKTVYFDLI 41
K+ N++ S + YIFH + NLK VY+ L+
Sbjct: 127 KLSINVLQSNTERPVYYIFHFLVHNLKAVYYGLV 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,711,440
Number of Sequences: 37544
Number of extensions: 496530
Number of successful extensions: 1261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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