Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30188
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   1e-38
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)        81   8e-16
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   31   1.1  
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    30   1.9  
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76)                  29   4.3  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.3  
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)         29   5.7  
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)          29   5.7  
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)         29   5.7  
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   5.7  
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)          29   5.7  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  157 bits (380), Expect = 1e-38
 Identities = 71/85 (83%), Positives = 76/85 (89%)
 Frame = +3

Query: 510 EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDK 689
           EK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VGIVAGGGRIDK
Sbjct: 118 EKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDK 177

Query: 690 PILKAGRAYHKYKVKRNCWPYVRGV 764
           P+LKAGRAYHKYK KRNCWP VRGV
Sbjct: 178 PMLKAGRAYHKYKAKRNCWPRVRGV 202



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 42/49 (85%), Positives = 46/49 (93%)
 Frame = +2

Query: 257 DYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 403
           DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG
Sbjct: 33  DYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 81



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 25/38 (65%), Positives = 33/38 (86%)
 Frame = +1

Query: 403 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLERK 516
           +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++E K
Sbjct: 82  MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEK 119



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/30 (80%), Positives = 25/30 (83%)
 Frame = +3

Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLR 251
           MGRVIR QRKGAGS+F SHTK RKGA  LR
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLR 30


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score = 81.4 bits (192), Expect = 8e-16
 Identities = 37/48 (77%), Positives = 41/48 (85%)
 Frame = +3

Query: 510 EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGM 653
           EK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +
Sbjct: 76  EKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRAL 123



 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 32/39 (82%), Positives = 36/39 (92%)
 Frame = +2

Query: 287 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 403
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 39



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 25/38 (65%), Positives = 33/38 (86%)
 Frame = +1

Query: 403 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLERK 516
           +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++E K
Sbjct: 40  MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEK 77


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 673 PPATIPTMPLLLDGRTFLAPDGSFT 599
           P AT   + L+LD  TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/64 (35%), Positives = 33/64 (51%)
 Frame = +3

Query: 519 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 698
           G   +LARA+G  A +I    +     V+LPS  +K + S     VG V+   R ++ I 
Sbjct: 137 GKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSSKCLASVGRVSNIERKNRVIG 194

Query: 699 KAGR 710
           KAGR
Sbjct: 195 KAGR 198


>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -2

Query: 542 TCQTTSITHFLSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SLREQ*R-APSLS* 366
           TC+ +++++    LH ++   ++P G+T  T RV+ +    N P   +  Q   +P    
Sbjct: 221 TCRVSTLSYNTPCLHIILQHAVSPHGLT--TCRVSTWSY--NMPCLHIISQHAVSPHGLT 276

Query: 365 TC-MDRGSVQQPKVHLYQGHGLYP*QLP*C 279
           TC +   S   P +H+   H + P  LP C
Sbjct: 277 TCRVSTSSYNMPCLHIISQHAVSPHGLPTC 306


>SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76)
          Length = 275

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -2

Query: 635 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLSRLHTMVPS-GIAPTGIT 459
           W  +LG       C L++ I +            TTS+T   ++ H  VP+ G+A  G T
Sbjct: 25  WDFILGLSSTHTKCRLAVGIYNGTDLISDVKVLPTTSVTQLTTQQHPSVPAGGVAVLGAT 84

Query: 458 FPTSRV 441
            P   V
Sbjct: 85  HPFPNV 90


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 534  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 662
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
          Length = 275

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 737 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 612
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
          Length = 321

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 737 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 612
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 144 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 181


>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
          Length = 249

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 737 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 612
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 801

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 737 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 612
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 86  TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 123


>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
          Length = 273

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 737 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 612
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 495 NGTL-RHSSNRHHISNFKSCFLS-TINKLACVEPSGAMKSSFLVLNLYGSRKCTTAK 331
           NGT+ + + +   IS FK+ F +  I +  CV P   ++   L + LYG ++    K
Sbjct: 22  NGTIFKGTDDESSISVFKNTFTTMVITRYICVHPLTWVRGIALWMELYGCKRAGVQK 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,308,311
Number of Sequences: 59808
Number of extensions: 583076
Number of successful extensions: 1353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)