Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30188
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 144 6e-35
U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian ... 33 0.23
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 33 0.23
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ... 31 1.2
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 6.7
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 6.7
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 28 6.7
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 28 6.7
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 28 6.7
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 28 6.7
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 28 6.7
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 28 6.7
Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical pr... 28 8.8
U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical p... 28 8.8
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 28 8.8
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 144 bits (349), Expect = 6e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +3
Query: 513 KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKP 692
K GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR DKP
Sbjct: 119 KSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKP 178
Query: 693 ILKAGRAYHKYKVKRNCWPYVRGV 764
+LKAGR+YHKYK KRN WP VRGV
Sbjct: 179 LLKAGRSYHKYKAKRNSWPRVRGV 202
Score = 91.5 bits (217), Expect = 6e-19
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = +2
Query: 254 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 403
LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPYK+KT K +A EG
Sbjct: 32 LDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEG 81
Score = 62.9 bits (146), Expect = 3e-10
Identities = 21/38 (55%), Positives = 33/38 (86%)
Frame = +1
Query: 403 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLERK 516
++TGQF++CG KA +++GN++PVG +PEGT +CN+E K
Sbjct: 82 MHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENK 119
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +3
Query: 162 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLR 251
MGR IR QRKGAG +F SH K RKGA KLR
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLR 30
>U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform b protein.
Length = 199
Score = 33.1 bits (72), Expect = 0.23
Identities = 9/39 (23%), Positives = 27/39 (69%)
Frame = -1
Query: 567 SQWRSFQRHVPDDLYHPFSLKIAHNGTLRHSSNRHHISN 451
SQ+R++ H D + +P+S+++ H ++++ ++ H+++
Sbjct: 161 SQFRAYYDHTKDQMMYPYSIELTHAQNIQNALSQSHVTS 199
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 33.1 bits (72), Expect = 0.23
Identities = 9/39 (23%), Positives = 27/39 (69%)
Frame = -1
Query: 567 SQWRSFQRHVPDDLYHPFSLKIAHNGTLRHSSNRHHISN 451
SQ+R++ H D + +P+S+++ H ++++ ++ H+++
Sbjct: 245 SQFRAYYDHTKDQMMYPYSIELTHAQNIQNALSQSHVTS 283
>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
protein K10E9.1 protein.
Length = 1451
Score = 30.7 bits (66), Expect = 1.2
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = -3
Query: 610 GSFTLVRLASGLCPITVAKFPE----ARARRPLSPIFSQDCTQWY---PQA*LQQASHFQ 452
GSF +VRL S L I+V +F E A R S F +D +W P A SH
Sbjct: 227 GSFEVVRLISAL--ISVTEFDENSRFANDERVRSWSFRKDIIEWVLLDPNA----HSHKL 280
Query: 451 LQELLSFHNKQIGLCRAFGSNEELLPCLELVWIA 350
L +L +H A S++ LL L+L +A
Sbjct: 281 LYQLCQYHPTYCYESEASSSDDSLLQTLKLCKLA 314
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 272 HGYIKGVVKDIIHDPGRGAPLAVVHFR 352
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 272 HGYIKGVVKDIIHDPGRGAPLAVVHFR 352
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 567 IGHNPDAKRTRVKLPSGAKKVL 632
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 331 FGCCTLPRSIQVQDKEGALHCSRRLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 510
FG L + D G HC GQ + K A +V+ MP+G V N++
Sbjct: 3377 FGFACLDLLYALPDDTGEYHCVATNRHGQTMISAKLACQGASHVITDSQMPQGLRVSNVK 3436
Query: 511 R 513
+
Sbjct: 3437 K 3437
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 331 FGCCTLPRSIQVQDKEGALHCSRRLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 510
FG L + D G HC GQ + K A +V+ MP+G V N++
Sbjct: 3294 FGFACLDLLYALPDDTGEYHCVATNRHGQTMISAKLACQGASHVITDSQMPQGLRVSNVK 3353
Query: 511 R 513
+
Sbjct: 3354 K 3354
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 331 FGCCTLPRSIQVQDKEGALHCSRRLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 510
FG L + D G HC GQ + K A +V+ MP+G V N++
Sbjct: 3615 FGFACLDLLYALPDDTGEYHCVATNRHGQTMISAKLACQGASHVITDSQMPQGLRVSNVK 3674
Query: 511 R 513
+
Sbjct: 3675 K 3675
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 331 FGCCTLPRSIQVQDKEGALHCSRRLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 510
FG L + D G HC GQ + K A +V+ MP+G V N++
Sbjct: 3615 FGFACLDLLYALPDDTGEYHCVATNRHGQTMISAKLACQGASHVITDSQMPQGLRVSNVK 3674
Query: 511 R 513
+
Sbjct: 3675 K 3675
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 331 FGCCTLPRSIQVQDKEGALHCSRRLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 510
FG L + D G HC GQ + K A +V+ MP+G V N++
Sbjct: 3615 FGFACLDLLYALPDDTGEYHCVATNRHGQTMISAKLACQGASHVITDSQMPQGLRVSNVK 3674
Query: 511 R 513
+
Sbjct: 3675 K 3675
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 331 FGCCTLPRSIQVQDKEGALHCSRRLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 510
FG L + D G HC GQ + K A +V+ MP+G V N++
Sbjct: 3310 FGFACLDLLYALPDDTGEYHCVATNRHGQTMISAKLACQGASHVITDSQMPQGLRVSNVK 3369
Query: 511 R 513
+
Sbjct: 3370 K 3370
>Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical
protein T05F1.8 protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -3
Query: 733 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 614
LT W+ +FK+ +++ RPPP +P L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPQMPESLKKKLGIPGTTEVAP 352
>U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical
protein C33F10.12 protein.
Length = 392
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -3
Query: 733 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 614
LT W+ +FK+ +++ RPPP +P L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPRMPESLKKKLGIPGTTEVAP 352
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 159 IMGRVIRAQRKGAGSVFVSHTKKRKGAPKLRS*ITLNVMDTSRELLR 299
I GR+ R G G +FV K KG P+LR + V+ R+ R
Sbjct: 45 IRGRLNRLPSAGVGDMFVCSVK--KGKPELRKKVLQGVVIRQRKQFR 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,248,412
Number of Sequences: 27780
Number of extensions: 422351
Number of successful extensions: 1123
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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