Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30188
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.61 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   5.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.5  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 346 LPRSIQVQDKEGALHCSRRLYTGQFVYCGK 435
           L +S++  DKE  L     LY  +F Y GK
Sbjct: 508 LNKSLKYSDKERDLSLRMILYFSEFAYLGK 537


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 516 FSLKIAHNGTLRHSSNRHHI 457
           F+L+I  NGT+ +   RH I
Sbjct: 164 FALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 516 FSLKIAHNGTLRHSSNRHHI 457
           F+L+I  NGT+ +   RH I
Sbjct: 164 FALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 516 FSLKIAHNGTLRHSSNRHHI 457
           F+L+I  NGT+ +   RH I
Sbjct: 215 FALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 516 FSLKIAHNGTLRHSSNRHHI 457
           F+L+I  NGT+ +   RH I
Sbjct: 164 FALRIYRNGTVNYLMRRHLI 183


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 567 IGHNPDAKRTRVKLPSGAKKVL 632
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 773 GSWHTTYIWPAVTFDLV 723
           G  H TY+ PAVT  L+
Sbjct: 253 GILHATYVIPAVTMMLL 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,601
Number of Sequences: 438
Number of extensions: 5125
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)