BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30187 (402 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 66 2e-12 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.029 SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 2.5 SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 5.8 SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 24 7.7 SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 24 7.7 >SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces pombe|chr 2|||Manual Length = 87 Score = 66.1 bits (154), Expect = 2e-12 Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 1/58 (1%) Frame = +1 Query: 91 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVVG 261 M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ + VD A GR K Y + G Sbjct: 1 MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISG 57 Score = 31.9 bits (69), Expect = 0.038 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = +2 Query: 275 GESDDCIVRLTKKDGIL 325 GESDDCI RLT +DG+L Sbjct: 63 GESDDCINRLTTQDGLL 79 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 32.3 bits (70), Expect = 0.029 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -2 Query: 326 PVYHLSLLTSRCNHQT-LPSSDSPTTTYILDVSAARPVAGSTSAITSCTEAWSLAW 162 PV L T+ C T +P + +P T+ +S++ PV + T+CT + S+ + Sbjct: 485 PVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLY 540 Score = 32.3 bits (70), Expect = 0.029 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -2 Query: 326 PVYHLSLLTSRCNHQT-LPSSDSPTTTYILDVSAARPVAGSTSAITSCTEAWSLAW 162 PV L T+ C T +P + +P T+ +S++ PV + T+CT + S+ + Sbjct: 544 PVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLY 599 >SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe|chr 2|||Manual Length = 882 Score = 25.8 bits (54), Expect = 2.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -2 Query: 191 SCTEAWSLAWMRRLLAEHFLGQYKST 114 S T+A SL W + +H + Q+KST Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674 >SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 310 Score = 24.6 bits (51), Expect = 5.8 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = -2 Query: 281 TLPSSD--SPTTTYILDVSAARPVAGSTSAITSCTE 180 T PS D SPT ++D S RP+A ++ A E Sbjct: 207 TKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIKE 242 >SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 703 Score = 24.2 bits (50), Expect = 7.7 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 173 SLAWMRRLLAEHFLGQYKSTNSPASFCI 90 SL M +L EH+ G++ SP CI Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCI 602 >SPBC887.10 |mcs4||two-component response regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 522 Score = 24.2 bits (50), Expect = 7.7 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -2 Query: 320 YHLSLLTSRCNHQTLPSSD-SPTTTYILDVSAARPVAGSTSAITSCTEA 177 Y+L + +HQTLPSS+ + T +L S+ + S ++ T A Sbjct: 173 YNLRNASRTRSHQTLPSSNVNKTGVLLLPRSSRQQTLASRPSLPDLTSA 221 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,154,073 Number of Sequences: 5004 Number of extensions: 18783 Number of successful extensions: 75 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 75 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 136158338 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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