Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30187
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    66   2e-12
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    32   0.029
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   2.5  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   5.8  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    24   7.7  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    24   7.7  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
 Frame = +1

Query: 91  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVVG 261
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISG 57



 Score = 31.9 bits (69), Expect = 0.038
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 275 GESDDCIVRLTKKDGIL 325
           GESDDCI RLT +DG+L
Sbjct: 63  GESDDCINRLTTQDGLL 79


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 326 PVYHLSLLTSRCNHQT-LPSSDSPTTTYILDVSAARPVAGSTSAITSCTEAWSLAW 162
           PV    L T+ C   T +P + +P T+    +S++ PV  +    T+CT + S+ +
Sbjct: 485 PVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLY 540



 Score = 32.3 bits (70), Expect = 0.029
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 326 PVYHLSLLTSRCNHQT-LPSSDSPTTTYILDVSAARPVAGSTSAITSCTEAWSLAW 162
           PV    L T+ C   T +P + +P T+    +S++ PV  +    T+CT + S+ +
Sbjct: 544 PVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLY 599


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 191 SCTEAWSLAWMRRLLAEHFLGQYKST 114
           S T+A SL W  +   +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 281 TLPSSD--SPTTTYILDVSAARPVAGSTSAITSCTE 180
           T PS D  SPT   ++D S  RP+A ++ A     E
Sbjct: 207 TKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIKE 242


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 173 SLAWMRRLLAEHFLGQYKSTNSPASFCI 90
           SL  M  +L EH+ G++    SP   CI
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCI 602


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 320 YHLSLLTSRCNHQTLPSSD-SPTTTYILDVSAARPVAGSTSAITSCTEA 177
           Y+L   +   +HQTLPSS+ + T   +L  S+ +    S  ++   T A
Sbjct: 173 YNLRNASRTRSHQTLPSSNVNKTGVLLLPRSSRQQTLASRPSLPDLTSA 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,073
Number of Sequences: 5004
Number of extensions: 18783
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)