Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30187
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     63   7e-11
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    62   2e-10
12_02_0674 - 21745321-21746223,21746229-21747608                       31   0.26 
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    27   4.2  
10_08_0657 - 19632363-19632494,19632587-19632864,19632964-196330...    26   9.7  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = +1

Query: 91  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVD 210
           MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I  VD
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD 40


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = +1

Query: 91  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVD 210
           MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I  VD
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD 40


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 302 TSRCNHQTLPSSDSPTTTYILDVSAARPVAGSTSAITS 189
           TS  N  T  +S  PTTT ++  + +RP+A +T  I +
Sbjct: 719 TSFSNDLTASTSTFPTTTRLIPTATSRPIASATGTIVA 756


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 86  IKCRTTPVNSLTCTARGNARPATASST 166
           ++CR+TP +SLT     N  PA++SS+
Sbjct: 82  LRCRSTPRDSLTYNTLLNHLPASSSSS 108


>10_08_0657 -
           19632363-19632494,19632587-19632864,19632964-19633084,
           19634337-19634438,19634510-19634622,19635000-19635373,
           19635663-19635688,19636048-19636261,19636343-19636460,
           19636930-19637017,19637113-19637280,19637559-19637631,
           19637796-19637902,19638057-19638094,19638190-19638305,
           19638579-19638698,19639498-19640000
          Length = 896

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 296 RCNHQTLPSSDSPTTTYILDVSAARPVAGSTSAIT 192
           RC  ++LP +  P    ++D +A R  A +  +++
Sbjct: 538 RCRRRSLPQTSRPQRVALMDAAAGRDPADAVESLS 572


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,691,124
Number of Sequences: 37544
Number of extensions: 129916
Number of successful extensions: 428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)