BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30187 (402 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191 63 7e-11 03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095... 62 2e-10 12_02_0674 - 21745321-21746223,21746229-21747608 31 0.26 02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 27 4.2 10_08_0657 - 19632363-19632494,19632587-19632864,19632964-196330... 26 9.7 >03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191 Length = 82 Score = 63.3 bits (147), Expect = 7e-11 Identities = 28/40 (70%), Positives = 33/40 (82%) Frame = +1 Query: 91 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVD 210 MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I VD Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD 40 >03_05_0610 - 26108546-26108671,26108739-26108789,26109410-26109542, 26109633-26109682 Length = 119 Score = 61.7 bits (143), Expect = 2e-10 Identities = 27/40 (67%), Positives = 32/40 (80%) Frame = +1 Query: 91 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVD 210 MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I VD Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD 40 >12_02_0674 - 21745321-21746223,21746229-21747608 Length = 760 Score = 31.5 bits (68), Expect = 0.26 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -2 Query: 302 TSRCNHQTLPSSDSPTTTYILDVSAARPVAGSTSAITS 189 TS N T +S PTTT ++ + +RP+A +T I + Sbjct: 719 TSFSNDLTASTSTFPTTTRLIPTATSRPIASATGTIVA 756 >02_05_1349 + 35841694-35843738,35844506-35844624,35844932-35845075, 35845189-35845310,35845474-35845609,35845861-35845957, 35846727-35846899,35847099-35847262,35847466-35847537, 35847833-35847928,35847999-35848124 Length = 1097 Score = 27.5 bits (58), Expect = 4.2 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +2 Query: 86 IKCRTTPVNSLTCTARGNARPATASST 166 ++CR+TP +SLT N PA++SS+ Sbjct: 82 LRCRSTPRDSLTYNTLLNHLPASSSSS 108 >10_08_0657 - 19632363-19632494,19632587-19632864,19632964-19633084, 19634337-19634438,19634510-19634622,19635000-19635373, 19635663-19635688,19636048-19636261,19636343-19636460, 19636930-19637017,19637113-19637280,19637559-19637631, 19637796-19637902,19638057-19638094,19638190-19638305, 19638579-19638698,19639498-19640000 Length = 896 Score = 26.2 bits (55), Expect = 9.7 Identities = 9/35 (25%), Positives = 19/35 (54%) Frame = -2 Query: 296 RCNHQTLPSSDSPTTTYILDVSAARPVAGSTSAIT 192 RC ++LP + P ++D +A R A + +++ Sbjct: 538 RCRRRSLPQTSRPQRVALMDAAAGRDPADAVESLS 572 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,691,124 Number of Sequences: 37544 Number of extensions: 129916 Number of successful extensions: 428 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 418 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 428 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 694697784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -