Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30187
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1333| Best HMM Match : IncA (HMM E-Value=0.32)                      28   3.3  
SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2)                27   4.3  
SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 

>SB_1333| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 302

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 139 CSASNRLIHAKD--HASVQLVIADVDPATGRAADTSKMYVVVGLS 267
           C A +  +H  D  HA  Q++ A +DP TG     S   V + LS
Sbjct: 38  CRAPHGRVHRGDDHHAKSQILTAKLDPLTGEIVLVSTGIVFLSLS 82


>SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2)
          Length = 304

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 294 MQSSDSPIFG*PHNNIHFRCVSSTTCGGVY 205
           M     P+F  P +N++  CV+ T  G V+
Sbjct: 57  MHLQPDPLFSIPSDNVYMTCVTGTILGRVF 86


>SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 311 SLLTSRCNHQTLPSSDSPTTTYILDVSAARPVAGSTSAITSCTE 180
           ++LTS  + +++PSS S  T  I  +S+A     S  A+T  T+
Sbjct: 16  TVLTSASSSESVPSSGSSATLIIDQLSSASSSRFSDVAVTLSTD 59


>SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 154 RLIHAKDHASVQLVIADVDPATGR 225
           R+ H  +HA  Q++ A +DP TG+
Sbjct: 44  RVHHGINHAKSQILTAKLDPLTGK 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,768,597
Number of Sequences: 59808
Number of extensions: 141374
Number of successful extensions: 490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)