Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30187
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    73   6e-14
Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical p...    30   0.54 
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    27   6.7  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 73.3 bits (172), Expect = 6e-14
 Identities = 35/58 (60%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
 Frame = +1

Query: 91  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVVG 261
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y + G
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICG 58



 Score = 32.7 bits (71), Expect = 0.10
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +2

Query: 269 KMGESDDCIVRLTKKDGILAKN 334
           +MGESDD I+RL +KDG++ ++
Sbjct: 62  RMGESDDAILRLAQKDGLVPRD 83


>Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical
           protein F54B11.11 protein.
          Length = 598

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 311 SLLTSRCNHQTLPSSDSPTTTYILDVSAARPVAGSTSAITSCT 183
           ++LT+     T P + +P TT+I  V    PV  ST+  +S T
Sbjct: 499 NILTTTATTTTPPVTSAPATTFITPVPFTPPVTNSTTIYSSNT 541


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 176 WSLAWMRRLLAEHFLGQYKS 117
           W++AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 4 protein.
          Length = 951

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 292 AIIRLSHLRIAPQQHTF*MCQQHDLW 215
           +I R+  L  AP+Q +  MC  HD+W
Sbjct: 302 SIYRMRELGHAPRQSSI-MCDSHDIW 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,469,144
Number of Sequences: 27780
Number of extensions: 108110
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)