Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30187
         (402 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    60   4e-10
At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    59   1e-09
At5g20070.1 68418.m02390 MutT/nudix family protein low similarit...    27   4.7  
At5g58220.1 68418.m07289 expressed protein                             26   8.2  

>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +1

Query: 91  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVD 210
           M+NDAG+  +LY PRKCSA+NR+I +KDHASVQL I  +D
Sbjct: 1   MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLD 40


>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 26/40 (65%), Positives = 32/40 (80%)
 Frame = +1

Query: 91  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVD 210
           MQN+ G+  +LY PRKCSA+NRLI +KDHASVQL I  +D
Sbjct: 1   MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD 40


>At5g20070.1 68418.m02390 MutT/nudix family protein low similarity
           to SP|Q19427 NADH pyrophosphatase (EC 3.6.1.-)
           {Caenorhabditis elegans}; contains Pfam profile PF00293:
           NUDIX domain
          Length = 438

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 278 LPSSDSPTTTY-ILDVSAARPVAGSTSAITSCTEAWSLAWM 159
           +P+  +P+  + +L  S  RP+  S+    + T  W L W+
Sbjct: 77  IPNHSTPSPDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWV 117


>At5g58220.1 68418.m07289 expressed protein
          Length = 324

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 269 SDSPTTTYILDVSAARPVAG 210
           S  P TT++LDVS   P AG
Sbjct: 202 SRPPITTHVLDVSRGAPAAG 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,021,985
Number of Sequences: 28952
Number of extensions: 98533
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)