Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30186
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      105   1e-23
08_02_1181 - 24985963-24986242,24987109-24987197                      104   3e-23
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     89   1e-18
01_03_0147 - 13125065-13126679,13126802-13127664                       28   3.6  
03_03_0179 - 15148688-15149251                                         27   6.2  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   6.2  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  105 bits (253), Expect = 1e-23
 Identities = 45/62 (72%), Positives = 54/62 (87%)
 Frame = +3

Query: 66  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 245
           +VTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+R+
Sbjct: 16  VVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRS 75

Query: 246 VP 251
           VP
Sbjct: 76  VP 77



 Score = 30.3 bits (65), Expect = 0.67
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +2

Query: 284 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 376
           ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 89  NDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  104 bits (250), Expect = 3e-23
 Identities = 44/64 (68%), Positives = 54/64 (84%)
 Frame = +3

Query: 60  KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 239
           + +VTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+
Sbjct: 12  EEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGI 71

Query: 240 RNVP 251
           R+VP
Sbjct: 72  RSVP 75



 Score = 31.9 bits (69), Expect = 0.22
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +2

Query: 284 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 376
           ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 87  NDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 18/89 (20%)
 Frame = +3

Query: 39  KKRQISHKR--IVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKF 164
           KKR    ++  +VTREYT+NLHKRLHG                  FKK+AP AIKEIRKF
Sbjct: 4   KKRGAGTRKDEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKF 63

Query: 165 AEKQMGTPDIRVDTRLNKFLWSKGVRNVP 251
           A+K MGT DIR+D +LNK +W+ G+R+VP
Sbjct: 64  AQKAMGTTDIRIDVKLNKAIWTNGIRSVP 92



 Score = 30.7 bits (66), Expect = 0.51
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +2

Query: 284 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 376
           ND+ED+  +L++LVT   +P   +KGL T+ V+
Sbjct: 104 NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 259 DTKGTFLTPLDQRNLFKRVSTRMSGVPICFS 167
           +T  ++LT L  RNL + +  R +G P C++
Sbjct: 477 ETARSYLTDLISRNLIQALHLRHNGTPSCYT 507


>03_03_0179 - 15148688-15149251
          Length = 187

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -1

Query: 305 VRNLHHHYVFVKASHGHEGNIS----DSLRPKEFV*AGVYSNVRSSHLFFSELSDFFDCS 138
           +R+LH   V+   S GHE +I        RP  F    + ++V + H F     +  D S
Sbjct: 48  IRSLHRPTVYGHYSTGHEDSIEAYFHSCRRPVPFFLPSLPASVSTGHDFLRSYREILD-S 106

Query: 137 WGTL 126
            GTL
Sbjct: 107 CGTL 110


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 87  VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 191
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,962,818
Number of Sequences: 37544
Number of extensions: 173897
Number of successful extensions: 358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)