Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30186
(422 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical pr... 49 2e-06
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 27 7.3
Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical p... 26 9.7
Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical p... 26 9.7
Z82260-1|CAB05140.1| 332|Caenorhabditis elegans Hypothetical pr... 26 9.7
AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like p... 26 9.7
AC024860-2|AAN84888.1| 173|Caenorhabditis elegans Hypothetical ... 26 9.7
>Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical
protein W09C5.6a protein.
Length = 122
Score = 105 bits (251), Expect = 2e-23
Identities = 44/72 (61%), Positives = 60/72 (83%)
Frame = +3
Query: 39 KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 218
KK + + +VTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT+LNK
Sbjct: 7 KKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNK 66
Query: 219 FLWSKGVRNVPF 254
F+WSKG++NVP+
Sbjct: 67 FIWSKGIKNVPY 78
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 284 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 385
N+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 89 NEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122
>Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical
protein W09C5.6b protein.
Length = 70
Score = 48.8 bits (111), Expect = 2e-06
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = +3
Query: 177 MGTPDIRVDTRLNKFLWSKGVRNVPF 254
M T D+RVDT+LNKF+WSKG++NVP+
Sbjct: 1 MKTNDVRVDTKLNKFIWSKGIKNVPY 26
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 284 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 385
N+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 37 NEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 48 QISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 170
+I+H++ + NL +++ G GF R R + +++ E
Sbjct: 171 EINHRKWRVKRDAENLSEQMQGCGFSSRVRREMTDVQNSGE 211
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 48 QISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 170
+I+H++ + NL +++ G GF R R + +++ E
Sbjct: 171 EINHRKWRVKRDAENLSEQMQGCGFSSRVRREMTDVQNSGE 211
>Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical
protein JC8.12b protein.
Length = 304
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 311 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 403
L+T+ ++ VAS +G+ N D+ + TP++
Sbjct: 70 LYTISQWITVASFEGIAMPNFDSVKRLTPIL 100
>Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical
protein JC8.12a protein.
Length = 315
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 311 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 403
L+T+ ++ VAS +G+ N D+ + TP++
Sbjct: 81 LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111
>Z82260-1|CAB05140.1| 332|Caenorhabditis elegans Hypothetical
protein C32H11.2 protein.
Length = 332
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 163 NFRISLIALGARFLNPTP*SRLCKLTVYSRVTIRLWLICLFF 38
++ IS +A+ F+ P + + R R+W++CLFF
Sbjct: 121 HYLISFLAIRKCFVYFFPSTERTIFPILGRFYKRVWILCLFF 162
>AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like
protein protein.
Length = 315
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 311 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 403
L+T+ ++ VAS +G+ N D+ + TP++
Sbjct: 81 LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111
>AC024860-2|AAN84888.1| 173|Caenorhabditis elegans Hypothetical
protein Y71H2AR.3 protein.
Length = 173
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 108 HGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 200
+ V K + P+ I++IRKF + + +PD V
Sbjct: 126 YNVDSKIKQPQVIEDIRKFVKIHVDSPDSEV 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,876,616
Number of Sequences: 27780
Number of extensions: 166408
Number of successful extensions: 384
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -