Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30183
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...   104   1e-23
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   3.2  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   3.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   9.7  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score =  104 bits (249), Expect = 1e-23
 Identities = 45/86 (52%), Positives = 63/86 (73%)
 Frame = +1

Query: 253 QRGFKRNDKSICISSASFIAHLVNQRVAHEIXXXXXXXXXVESPTDDSVEVAIAFLKECG 432
           ++ F+RNDKS+CISS+SFIAHL+NQ++AHEI         +E PT+DS+E+A+  L+E G
Sbjct: 203 RKSFQRNDKSMCISSSSFIAHLINQKIAHEIVGLQILAVLLERPTNDSIEIAVMLLREIG 262

Query: 433 QKLTEVSSKGVNAIFEMLRNILHEGR 510
             L EVS++  N +FE  R ILHEG+
Sbjct: 263 AYLAEVSTRAYNGVFERFRTILHEGQ 288



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 42/85 (49%), Positives = 57/85 (67%)
 Frame = +2

Query: 5   WEALKKSXXXXXXXXXXXXXXXXXXELLKENIVRGRGLLCRSVIQAQAASPTFTNVYAAL 184
           WEALKKS                  EL +ENI+RGR L CRS+++AQAAS  FT +YAA+
Sbjct: 120 WEALKKSINGLINKVNKSNIRDIIPELFQENIIRGRALYCRSIMKAQAASLPFTPIYAAM 179

Query: 185 VSAVNSRFPNIGELLLKRLVIQFKE 259
            + +N++FP IGELLL RL++QF++
Sbjct: 180 TAVINTKFPQIGELLLTRLIVQFRK 204



 Score = 34.3 bits (75), Expect = 0.016
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 510 LDQRVPYLIEVMFQVWKDGFKDHPAXXXXXXXXXXXXQFTHPI 638
           L++R  ++IEV+FQ  KD FK++P             Q TH I
Sbjct: 289 LERRTQFIIEVLFQTRKDKFKNNPTIPQELDLVEEEDQITHYI 331


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 97  VFFQ*FLYNDTYVTDINFV 41
           V F  FLY+ TY+TD NFV
Sbjct: 193 VGFTMFLYHKTYLTDKNFV 211


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 10  SSQKVNSRSHQQN*CR*HRYHYKGIIERKHCQRSRFVMP 126
           S+ K N    + N  R HR+H+    E KH +  R   P
Sbjct: 11  STHKFNETDRETNHSRRHRHHHSRHRESKHGRHDRSERP 49


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 280 SICISSASFIAHLVNQRVAHEIXXXXXXXXXVESPTDDSVEVAIAFLKECGQKLT 444
           S C S   FI H+   R+   +         V+SP+D   +V++  +++  +KLT
Sbjct: 400 SECTSLEVFIQHITLSRI---LSHFVRKVYPVKSPSDSHCKVSLPAVRDHEEKLT 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,823
Number of Sequences: 5004
Number of extensions: 43750
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)