Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30183
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 101 5e-22
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 88 5e-18
11_08_0024 + 27747449-27747940,27748141-27750177 30 1.4
11_08_0009 + 27600881-27602592,27602665-27603008,27603159-276038... 30 1.4
05_04_0160 - 18624952-18625106,18625411-18625535,18625954-186260... 29 3.3
10_06_0140 + 11147019-11147791,11148301-11150524 28 7.6
07_02_0002 + 11650397-11650465,11650600-11650848,11651189-116512... 28 7.6
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 101 bits (242), Expect = 5e-22
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = +1
Query: 250 IQRGFKRNDKSICISSASFIAHLVNQRVAHEIXXXXXXXXXVESPTDDSVEVAIAFLKEC 429
++R +KRNDK +++ FIAHLVNQ VAHE+ +E+PTDDSVEVA+ F+KEC
Sbjct: 319 LKRAYKRNDKPQLLAATKFIAHLVNQVVAHELVALELLTVLLENPTDDSVEVAVGFVKEC 378
Query: 430 GQKLTEVSSKGVNAIFEMLRNILHEG 507
G L ++S +G++AIFE R ILHEG
Sbjct: 379 GAMLQDLSPQGLHAIFERFRGILHEG 404
Score = 88.2 bits (209), Expect = 5e-18
Identities = 43/85 (50%), Positives = 56/85 (65%)
Frame = +2
Query: 2 AWEALKKSXXXXXXXXXXXXXXXXXXELLKENIVRGRGLLCRSVIQAQAASPTFTNVYAA 181
+W+ALKKS EL EN+VRGRGL C+S I++Q ASP FT+V+AA
Sbjct: 236 SWDALKKSINGLVNKVNATNIKNIVPELFAENLVRGRGLFCQSCIKSQMASPGFTDVFAA 295
Query: 182 LVSAVNSRFPNIGELLLKRLVIQFK 256
LV+ VN++FP IG LLL R+V+Q K
Sbjct: 296 LVAVVNTKFPEIGRLLLVRVVLQLK 320
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 510 LDQRVPYLIEVMFQVWKDGFKDHPAXXXXXXXXXXXXQFTHPI 638
+D+RV +LIE +F + K F+ PA QFTH I
Sbjct: 406 IDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEI 448
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 88.2 bits (209), Expect = 5e-18
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 AWEALKKSXXXXXXXXXXXXXXXXXXELLKENIVRGRGLLCRSVIQAQAASPTFTNVYAA 181
+W+ALKKS EL EN+VRGRGL C+S I++Q ASP FT+V+AA
Sbjct: 135 SWDALKKSINGLVNKVNATNVKNIVPELFAENLVRGRGLFCQSCIKSQMASPGFTDVFAA 194
Query: 182 LVSAVNSRFPNIGELLLKRLVIQFKEVL--NAMINQFAFPLHLSLHI 316
LV+ VN++FP IG LLL R+V+Q K N + P L + +
Sbjct: 195 LVAIVNTKFPEIGRLLLVRVVLQLKRAYKRNDKVTFLNSPFQLDMQV 241
Score = 44.8 bits (101), Expect(2) = 1e-11
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 403 VAIAFLKECGQKLTEVSSKGVNAIFEMLRNILHEG 507
VA+ F+KECG L ++S +G++AIFE R IL EG
Sbjct: 295 VAVGFVKECGAMLQDLSPQGLHAIFERFRGILQEG 329
Score = 42.3 bits (95), Expect(2) = 1e-11
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +1
Query: 250 IQRGFKRNDKSICISSASFIAHLVNQRVAHEIXXXXXXXXXVESPTDDSVEVAIAFL 420
++R +KRNDK ++S L Q +AHE+ +E+PTDDSVEV I FL
Sbjct: 218 LKRAYKRNDKVTFLNSPF---QLDMQVIAHELVALELLTVLLENPTDDSVEVHILFL 271
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 510 LDQRVPYLIEVMFQVWKDGFKDHPAXXXXXXXXXXXXQFTHPI 638
+D+RV +LIE +F + K F+ PA QFTH I
Sbjct: 331 IDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEI 373
>11_08_0024 + 27747449-27747940,27748141-27750177
Length = 842
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 550 WNITSIRYGTLWSNDLHAKCSLASRKLHL--HL*MILQSIFGHIP 422
WN+TS++Y L N LH+ S + L + L + S+FG IP
Sbjct: 422 WNLTSLKYLDLSDNQLHSTISESIMDLEILQWLDLSENSLFGPIP 466
>11_08_0009 +
27600881-27602592,27602665-27603008,27603159-27603806,
27603908-27604296
Length = 1030
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 550 WNITSIRYGTLWSNDLHAKCSLASRKLHL--HL*MILQSIFGHIP 422
WN+TS++Y L N LH+ S + L + L + S+FG IP
Sbjct: 495 WNLTSLKYLDLSDNQLHSTISESIMDLEILQWLDLSENSLFGPIP 539
>05_04_0160 -
18624952-18625106,18625411-18625535,18625954-18626087,
18626221-18626298,18626456-18626561,18627739-18627836
Length = 231
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 116 LLCRSVIQAQAASPTFTNVYAALVSAVNSRFP 211
LLC+ +I++ + P TN+YA +S + P
Sbjct: 39 LLCKELIRSGISDPAGTNLYAVFISNEEKKVP 70
>10_06_0140 + 11147019-11147791,11148301-11150524
Length = 998
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 479 SKIAFTPLDDTSVNFWPHSFKNAMATSTE-SSVGDSTSKVRS 357
SK F +DD +W SF+NA + T SS+ T+ ++S
Sbjct: 256 SKRFFVVIDDMQREYWNSSFRNAFPSDTGLSSIVIVTTAIQS 297
>07_02_0002 +
11650397-11650465,11650600-11650848,11651189-11651219,
11651491-11651535,11651963-11652027
Length = 152
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/65 (20%), Positives = 27/65 (41%)
Frame = +1
Query: 301 SFIAHLVNQRVAHEIXXXXXXXXXVESPTDDSVEVAIAFLKECGQKLTEVSSKGVNAIFE 480
SF+ N V H + + D VE+ K+ ++L + +K +N++
Sbjct: 28 SFVVTTKNDHVDHSVLESSSMLNLGKQDEPDKVEILAKATKDVPEELETIETKSMNSVKN 87
Query: 481 MLRNI 495
+N+
Sbjct: 88 TSKNV 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,624,913
Number of Sequences: 37544
Number of extensions: 254683
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -