Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30183
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8962| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   8e-04
SB_10664| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6681| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_16008| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.6e-09)         29   2.5  
SB_27753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)          28   7.7  

>SB_8962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = +3

Query: 510 LDQRVPYLIEVMFQVWKDGFKDHPAXXXXXXXXXXXXQFTH 632
           +++RV Y+IEVMF V KDGFKDH              Q TH
Sbjct: 27  IERRVEYMIEVMFAVRKDGFKDHVTIPEGLDLVEEEDQITH 67


>SB_10664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +1

Query: 277 KSICISSASFIAHLVNQRV 333
           K++C+++  F+AHLVNQ+V
Sbjct: 28  KTVCLTTTRFVAHLVNQQV 46


>SB_6681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 152 SPTFTNVYAALVSAVNSRFPNIGELLLKRLVIQFKEVLNA 271
           SPT+ +   AL  AV   FP+ G  + K+LV +F + LNA
Sbjct: 9   SPTYQDYVNALKKAVPQLFPDQG--VFKQLVTEFGQSLNA 46


>SB_16008| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.6e-09)
          Length = 314

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 152 SPTFTNVYAALVSAVNSRFPNIGELLLKRLVIQFKEVLNA 271
           SPT+ +   AL  AV   FP+ G  + K+LV +F + LNA
Sbjct: 210 SPTYQDYVNALKKAVPQLFPDQG--VFKQLVTEFGQSLNA 247


>SB_27753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 568 NPSFQTWNITSIRYGTLWSNDLH 500
           NP  QTW+  S  Y   WS+D H
Sbjct: 29  NPYLQTWSFYSYPYLQTWSHDSH 51


>SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)
          Length = 411

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 291 FLCIFHCTFSESESGT*DSGFRTSH 365
           FLC+F   FS+S  GT  +   T H
Sbjct: 12  FLCLFRMAFSQSNDGTRSNYLATEH 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,356,743
Number of Sequences: 59808
Number of extensions: 312835
Number of successful extensions: 504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)