Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30183
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d...    97   9e-21
At1g62410.1 68414.m07041 MIF4G domain-containing protein similar...    31   0.90 

>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
           domain-containing protein similar to SP|Q9P6R9 Cell
           cycle control protein cwf22 {Schizosaccharomyces pombe};
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 900

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 45/86 (52%), Positives = 58/86 (67%)
 Frame = +1

Query: 250 IQRGFKRNDKSICISSASFIAHLVNQRVAHEIXXXXXXXXXVESPTDDSVEVAIAFLKEC 429
           ++R +KRNDK   +++  FIAHLVNQ+VA EI         +  PTDDSVEVA+ F+ EC
Sbjct: 441 LKRAYKRNDKPQLLAAVKFIAHLVNQQVAEEIIALELVTILLGDPTDDSVEVAVGFVTEC 500

Query: 430 GQKLTEVSSKGVNAIFEMLRNILHEG 507
           G  L +VS +G+N IFE  R ILHEG
Sbjct: 501 GAMLQDVSPRGLNGIFERFRGILHEG 526



 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 40/84 (47%), Positives = 56/84 (66%)
 Frame = +2

Query: 5   WEALKKSXXXXXXXXXXXXXXXXXXELLKENIVRGRGLLCRSVIQAQAASPTFTNVYAAL 184
           W+AL+KS                  EL  EN++RGRGL CRS +++Q ASP FT+V+AAL
Sbjct: 359 WDALRKSINGLVNKVNASNIKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAAL 418

Query: 185 VSAVNSRFPNIGELLLKRLVIQFK 256
           V+ +N++FP + ELLLKR+V+Q K
Sbjct: 419 VAVINAKFPEVAELLLKRVVLQLK 442



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 510 LDQRVPYLIEVMFQVWKDGFKDHPA 584
           +D+RV YLIE +F   K  F+ HPA
Sbjct: 528 IDKRVQYLIESLFATRKAKFQGHPA 552


>At1g62410.1 68414.m07041 MIF4G domain-containing protein similar to
           SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
           P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
           contains Pfam profile PF02854: MIF4G domain
          Length = 223

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +1

Query: 304 FIAHLVNQRVAHEIXXXXXXXXXVESPTDDSVEVAIAFLKECGQKLTEVSSKGVNAIFEM 483
           F+  ++ ++V   I            P+++ +     FL   G+KL  ++SK +N I   
Sbjct: 113 FLKRMLTEKVVLAIGQKLLEDAEQMCPSEEKIIAICLFLNTVGKKLDSLNSKLMNEILRR 172

Query: 484 LRNI 495
           L+N+
Sbjct: 173 LKNL 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,646
Number of Sequences: 28952
Number of extensions: 219851
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)