Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30182
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    28   0.95 
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    26   5.1  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   5.1  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   8.9  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 199 FNSSRNVHQNTVHENVSLNKMLINIK 276
           +N S N  QN++  N+SLNK  + I+
Sbjct: 165 YNKSNNGWQNSIRHNLSLNKAFMKIE 190


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 229 TVHENVSLNKMLINIKTGTWYG 294
           ++H+ V++ K L +I  G W+G
Sbjct: 112 SIHQFVTMGKTLCDINPGQWFG 133


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/46 (19%), Positives = 24/46 (52%)
 Frame = +1

Query: 397 KNNVLTNTYRFSRFILRKRNVYIYYLLYMIERNNVKCNEIIMNLIN 534
           +   + NT  F R+ ++ +    Y +++++   ++KC     +L+N
Sbjct: 39  EQRTVNNTVTFDRYTMQYQEATQYSIVFVVVFQDLKCMAYSQSLLN 84


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 107 RRLNEKLLKKSAVQKSLINTFACYTD 30
           R + E++L K   +  LINT   YTD
Sbjct: 711 RAIRERVLAKGFTEDHLINTIQEYTD 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,931
Number of Sequences: 5004
Number of extensions: 45877
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)