Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30181
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    23   2.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.4  

>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = -2

Query: 78  GNCCLDAACCCMSTC 34
           G C  D  CC   +C
Sbjct: 102 GRCAFDGICCSQDSC 116


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 385 PMPTSMMAQNGPVQTQANGPQHSFPSIHN 471
           P PTS+M +  P     +    + P  HN
Sbjct: 313 PTPTSVMTELYPSPVPGHSTSPNLPLTHN 341


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 54  CCCMSTC 34
           CCC+ TC
Sbjct: 190 CCCLRTC 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,750
Number of Sequences: 336
Number of extensions: 2407
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)