Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30181
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    29   0.55 
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    28   0.96 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   3.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   3.9  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    25   6.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   9.0  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 555 P*CCSRQWKACCRGSPVEVCSLSRK 481
           P CCS++ K+CC       CS  +K
Sbjct: 237 PSCCSQEKKSCCSSKKPSCCSQEKK 261



 Score = 28.7 bits (61), Expect = 0.73
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 555 P*CCSRQWKACCRGSPVEVCSLSRK 481
           P CCS++ K CC       CS  +K
Sbjct: 253 PSCCSQEKKGCCSTEKTSCCSQEKK 277



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 549 CCSRQWKACCRGSPVEVCS 493
           CCS++ K+CC       CS
Sbjct: 271 CCSQEKKSCCTSEKPSCCS 289


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 69  CLDAACCCMSTCLHSGEYWR 10
           C+    C  S CLH+GE WR
Sbjct: 110 CVYEFLCVESVCLHTGENWR 129


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 364 PMHAQTGPMPTSMMAQNGPVQTQANGPQ 447
           P    + P PTS  + NG ++  AN P+
Sbjct: 419 PQSLPSTPFPTSSSSTNGTLEPNANSPK 446


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 219 NSPLCPISLCNKPNDERARTD 281
           N+ L  +S+C + ND +A+TD
Sbjct: 235 NATLASVSICEEQNDFKAKTD 255


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 300 PVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDGPERSRAD 428
           P+   +  AG A   G P G P   P  +    D+GPE    D
Sbjct: 603 PIMAKIYQAGGA-PGGAPGGMPGGAPGGAPGGADNGPEVEEVD 644


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 460 SIHNTSFFAGQTADFNRTSSTTCLPLTRATSRPKSCSS 573
           S  ++S F+   +  + TSS+T    + ++SRP S SS
Sbjct: 361 SSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 388 MPTSMMAQNGPVQTQANGPQHSFPSIHNTSF 480
           MP+  +  N P     N   +SF SIH TSF
Sbjct: 1   MPSLALPINKPSHHNVNYNGNSFNSIHATSF 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,116
Number of Sequences: 5004
Number of extensions: 37646
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)