Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30181
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 34 0.11
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 31 0.57
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 30 1.3
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 29 2.3
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451 29 3.0
05_01_0245 - 1829921-1830359,1830449-1831002,1832016-1832144,183... 29 4.0
03_02_0700 - 10517754-10519100 29 4.0
02_05_0401 + 28683397-28683738 29 4.0
11_03_0128 - 10437407-10438049,10438097-10438272 28 5.3
09_04_0444 - 17649685-17650524 28 5.3
02_05_0296 + 27639981-27640766 28 5.3
02_05_0158 - 26362259-26362695,26363732-26363903 28 5.3
10_08_0798 + 20649370-20649428,20649515-20649719 28 7.0
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 7.0
03_04_0009 + 16359273-16359563 28 7.0
11_06_0692 + 26327487-26328509 27 9.2
09_06_0263 - 21923991-21924614,21924722-21925438 27 9.2
05_06_0031 + 25065997-25066710 27 9.2
03_02_1005 - 13136999-13137467,13137871-13138050,13138422-131385... 27 9.2
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 285 KHPHE---PVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDGPE 413
+HP + P+ E +DA+ + KH PP PHA P H +D P+
Sbjct: 236 QHPRKDNPPLEEIIDASTQR-KHQAPPQLPHANPMLPHLHVDHSPQ 280
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 354 PGQPHARPDRSHADLDDGPERSRADTGQRTSTFVSLNSQHVFLC 485
P PHA+P RS A P S D+G +S++ + HV +C
Sbjct: 288 PTPPHAKPARSAAPRAHRPPSSVMDSGY-SSSYAAAAGMHVVIC 330
>04_04_1079 - 30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +3
Query: 246 CNKPNDERARTDTKH-PHEP--VSEHVDAAGRAGKHG-RPPGQPHARPDRSHADLDD-GP 410
CN +E + DT H H P +A R K RP + AR HA +DD P
Sbjct: 863 CNDKLEENEKADTSHVKHAPRKRGRPSSSASRTAKPAPRPVRRTRARRGNQHAKIDDVEP 922
Query: 411 ERS-RADTG 434
E S +TG
Sbjct: 923 EESDHGETG 931
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 255 PNDERARTDTKHPHEPVSEHVDAAGRAGKHGRPPGQP 365
P +AR + +P P S AAG +G H R QP
Sbjct: 55 PAHPQARLPSPYPQIPSSSSAAAAGSSGHHARSLSQP 91
>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
Length = 511
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/59 (27%), Positives = 20/59 (33%)
Frame = +3
Query: 276 TDTKHPHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDGPERSRADTGQRTSTF 452
TD P P++ R K PP +P RSH G R G+ F
Sbjct: 4 TDPPPPPPPLTRKRGREARKSKEAAPPREPRRARSRSHVPPPPGAGDGRGGDGEEDVGF 62
>05_01_0245 -
1829921-1830359,1830449-1831002,1832016-1832144,
1832249-1832339,1832646-1832758,1832836-1833079,
1833193-1833281,1833357-1833424,1833790-1833874,
1834038-1834190
Length = 654
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 276 TDTKHPHEPVSEH--VDAAGRAGKHGRPPGQPHARPDRSH 389
+D HP P +E VD RAG RP P ARP +H
Sbjct: 388 SDMAHPPPPKTEKELVDEWKRAGPRPRPLPPPPARPYYAH 427
>03_02_0700 - 10517754-10519100
Length = 448
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 288 HPHEPVSEHVDAAGRAGKHGRPPGQPHARPD 380
HPH ++EH DA R G G+ R D
Sbjct: 63 HPHRALAEHHDALSRGGGSSSSSGRAAQRDD 93
>02_05_0401 + 28683397-28683738
Length = 113
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 315 VDAAGRAGKHGRPPGQPHARPDRSHADLD-DGPERSRADTGQRTSTFV 455
+D G+ GK Q H+ R H+DL+ D E T QR++ V
Sbjct: 1 MDLKGKGGKDPAIGAQIHSPGSRGHSDLEADARELQNGSTRQRSALVV 48
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 309 EHVDAAGRAGKHGRPPGQPHARPDRSH-ADLDDGPERSRADTGQRTST 449
+ VDAAG G H P RPD H A P RSR+ ++T
Sbjct: 95 QRVDAAGDEGPHQLCPAAGIHRPDDGHRARQRHLPRRSRSTASTSSTT 142
>09_04_0444 - 17649685-17650524
Length = 279
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 288 HPHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDGPERS 419
H H + AA AG + P +P A P SH+ DDG + S
Sbjct: 147 HQHHMAAAAAAAAAAAGGY---PQRPLALPSTSHSGRDDGDDLS 187
>02_05_0296 + 27639981-27640766
Length = 261
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/73 (21%), Positives = 22/73 (30%)
Frame = +3
Query: 282 TKHPHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDGPERSRADTGQRTSTFVSL 461
T+HP V AG P PH+ ++ S T
Sbjct: 5 TEHPSPTAPPQVQTAGLPAAASPGPASPHSPSEQGDKTAPGAATASTMTTASSGEPSPRS 64
Query: 462 NSQHVFLCGTNCR 500
+ +H F G CR
Sbjct: 65 SGKHAFYRGIRCR 77
>02_05_0158 - 26362259-26362695,26363732-26363903
Length = 202
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = -1
Query: 433 PVSARDRSGPSSRS-AWDRSGRAWGCPGGRPCFPARPAASTCSETGSCGCLVSVLARSSF 257
P S PS+ + A S P P P +T TGS G ARS
Sbjct: 130 PTPTASSSPPSTATPATPSSDPGMDTPSSTPDATTTPTTTTTKSTGSTGGASGSEARSVM 189
Query: 256 GLLHNEMG 233
GLL +G
Sbjct: 190 GLLVGAVG 197
>10_08_0798 + 20649370-20649428,20649515-20649719
Length = 87
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Frame = -1
Query: 385 DRSGRAWGCPGGRPCFPARPAAS------TCSETGSCGC 287
D+ G A CPGG C A A S TCS CGC
Sbjct: 5 DKCGCAVPCPGGTGCRCASSARSGGGDHTTCSCGDHCGC 43
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 418 DRSGPSSRSAWDRSGRAWGCPGGRPCFPARPAASTCSETGSCG 290
D +G +WD S +W RPAA +C GSCG
Sbjct: 252 DSTGTMMFLSWDNSSSSW------MLIFQRPAAGSCEVYGSCG 288
>03_04_0009 + 16359273-16359563
Length = 96
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -1
Query: 364 GCPGGRPCFPARPAASTCSETGSCGC----LVSVLARS 263
GC GGR PAA C+ TG G LV+ L RS
Sbjct: 9 GCSGGRRLQEEEPAARWCAVTGGRGFMARHLVAALLRS 46
>11_06_0692 + 26327487-26328509
Length = 340
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 412 SGPSSRSAWDRSGRAWGCPGGRPCFPARPAASTCSETGSCGCL 284
S PSS + + P G PCF + PA+ T G GCL
Sbjct: 30 SAPSSPTREREREHHFASPHGAPCFFSAPASPTRGGGGG-GCL 71
>09_06_0263 - 21923991-21924614,21924722-21925438
Length = 446
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 421 RDRSGPSSRSAWDRSGRAWGCPGGRPCFPARPAAST-CSETGSC 293
R SG + RS G PGG PA P A+T CS SC
Sbjct: 59 RRASGSETAPPPHRSIGKIGMPGGHNKQPAPPVATTGCSALASC 102
>05_06_0031 + 25065997-25066710
Length = 237
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 433 PVSARDRSGPSSRSAWDRSGRAWGCPGGRPCFPARPAASTCSETGSCGCLVSVLARSSFG 254
PV R PS WD G +P F AR ++ +G+ LV +LA + G
Sbjct: 78 PVLTVRRRRPSLHHRWDGFLGDGAASGQKPLFSARRSSILGVGSGAAAVLVDLLAPGAAG 137
>03_02_1005 -
13136999-13137467,13137871-13138050,13138422-13138551,
13138651-13138738,13139316-13139660
Length = 403
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 388 MPTSMMAQNGPVQTQANGPQHSFPSIHNTSFFAGQTADFNRTSS 519
+PTS + + G TQ P S + SFF ++A + +S
Sbjct: 260 IPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSKSARIDSATS 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,452
Number of Sequences: 37544
Number of extensions: 309667
Number of successful extensions: 1442
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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