Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30181
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42630| Best HMM Match : Ets (HMM E-Value=0)                         30   1.8  
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  29   4.1  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      29   4.1  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_43281| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               28   7.1  
SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_2577| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)                   27   9.4  

>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
          Length = 631

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 276 TDTKHPHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDD 404
           T T+H HE VS HVDAA    +H       H   +      DD
Sbjct: 203 TRTRHVHEDVSRHVDAA--MSRHAHEEMSRHGNENTVSHSTDD 243


>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 977

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 276 TDTKHPHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDD 404
           T T+H HE VS HVDAA    +H       H   +      DD
Sbjct: 549 TRTRHVHEDVSRHVDAA--MSRHAHEEMSRHGNENTVSHSTDD 589


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 291 PHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDG 407
           PHEP     D        GRP   P  R D+S   LD+G
Sbjct: 459 PHEPGRPSFDQRRPPYDQGRPGMPPGPRHDQSRPPLDEG 497


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 291 PHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDG 407
           PHEP     D        GRP   P  R D+S   LD+G
Sbjct: 225 PHEPGRPSFDQRRPPYDQGRPGMPPGPRHDQSRPPLDEG 263


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 279  DTKHPHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDG 407
            + KH H   ++H    G  G HGR   +   + D+   D D+G
Sbjct: 1629 ERKHSHSKHNKHRHKHGGHGGHGRHKRRESDKEDKDDDDQDNG 1671


>SB_43281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 225 PLCPISLCNKPNDERARTDTKHPHEPVSEHVD-AAGRAGKHGRPPGQP 365
           PL P+S+   P    + +DT H  E  +EH +   G   KHG     P
Sbjct: 27  PLAPVSMDTIPKSSNSASDT-HMTESANEHPENVRGLGLKHGSMERHP 73


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 412  SGPSSRSA--WDRSGRAWGCPGGRPCFPARPAASTC 311
            SGP + S   W RSG   G  GGR    +  A +TC
Sbjct: 2919 SGPGNVSTYTWKRSGAGHGGTGGRGACDSSAAITTC 2954


>SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 367 WGCPGGRPCFPARPAASTCSETGSCGCLVSVLARSSFGLLHNE 239
           W  PG RPC  +    + C +T + G +     R+     HNE
Sbjct: 726 WDMPGYRPCNGSSCHVTQCPKTPNRGTMCQEQHRTQIDDSHNE 768


>SB_2577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 703

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +3

Query: 294 HEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDGPERSRADTGQR 440
           + P  E +      G+  R       R D      DD  ER R DTG+R
Sbjct: 489 NRPRGEGIKKRDDTGERKRDDTGERKRNDTGERKRDDSGERKRDDTGER 537


>SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)
          Length = 1055

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 539 VSGRHVVEEVRLKSAVCPAKKDVL*IEGNEC*GPLACVCT 420
           + GR   E+V      C A+KDV+ I+ NE  G L C+ T
Sbjct: 276 LEGRVYGEDVLFYIETC-AEKDVVAIKSNEVNGYLCCIST 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,081,919
Number of Sequences: 59808
Number of extensions: 351829
Number of successful extensions: 1257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)