Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30181
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical pr...    33   0.17 
AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical ...    32   0.39 
Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical pr...    29   2.1  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    29   2.1  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    29   2.1  
U64598-5|AAK39217.3|  638|Caenorhabditis elegans Mechanosensory ...    29   3.6  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   4.8  
U00066-10|AAA50744.2|  106|Caenorhabditis elegans Hypothetical p...    28   6.3  
U00047-2|AAA50688.2|  275|Caenorhabditis elegans Abnormal cell l...    28   6.3  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z81125-6|CAI79225.1|  234|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF408760-1|AAO27839.1|  318|Caenorhabditis elegans unknown prote...    27   8.3  

>U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical
           protein ZK813.1 protein.
          Length = 145

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +3

Query: 279 DTKHP-HEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDD--GPERSRADTGQRTST 449
           D  +P ++P   H    GR G+HGR     H R  R H+D  D     RSR+ +G  +S 
Sbjct: 37  DNGNPFYKPRKHHRRRHGRRGRHGR-----HGRHGRRHSDSSDSSSESRSRSSSGSSSSE 91

Query: 450 FVSLNSQHVFL 482
             S    + ++
Sbjct: 92  SRSYERDYYYV 102


>AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.8 protein.
          Length = 581

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 24  PSGGMCSCSNRLRPGNSSLIITKVSVWAVAW 116
           P GG CS   +L PGN  + +  VS+ +++W
Sbjct: 224 PEGGRCSGFVKLAPGNKDMFMAHVSMSSLSW 254


>Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical
           protein T26E4.10 protein.
          Length = 90

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 400 SRSAWDRSGRAWGCPGGRPCFPARPAASTCSETGSCGC 287
           ++  W      WGC G  P   A PA   C   G CGC
Sbjct: 52  AKRQWGCGCDCWGCCGPTPDPAATPAPCNC---GCCGC 86


>Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical
           protein T26E4.9 protein.
          Length = 86

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 400 SRSAWDRSGRAWGCPGGRPCFPARPAASTCSETGSCGC 287
           ++  W      WGC G  P   A PA   C   G CGC
Sbjct: 48  AKRQWGCGCDCWGCCGPTPDPAATPAPCNC---GCCGC 82


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
           glp-1 protein.
          Length = 1492

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 291 PHEPVSEHVDAAGRAGKHGRPPGQPH 368
           PH PV   +  +  +G  G PPG PH
Sbjct: 857 PHSPVPGALTGSQASGPFGAPPGAPH 882


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
           protein Y53H1C.2a protein.
          Length = 1512

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 291 PHEPVSEHVDAAGRAGKHGRPPGQPH 368
           PH PV   +  +  +G  G PPG PH
Sbjct: 877 PHSPVPGALTGSQASGPFGAPPGAPH 902


>U64598-5|AAK39217.3|  638|Caenorhabditis elegans Mechanosensory
           abnormality protein18 protein.
          Length = 638

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 381 RSHADLDDGPERSRAD--TGQRTSTFVSLNSQHVFLCGTNCR 500
           R+HA +DD     R D  TG+  + FV  N+QH  L     R
Sbjct: 506 RAHAGIDDCAVVGRQDHVTGEVPAAFVVKNAQHPLLASAEVR 547


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
 Frame = +1

Query: 382 GPMPTSMMAQNGPVQ-----TQANGPQHSFPSIHNTSFFAGQTADFNRTSSTTCLPLTRA 546
           GPM ++ + Q  PV      T   G   S P+I  T    G T       ST   P+T A
Sbjct: 574 GPMGSTGVTQASPVTGATGFTMPTGISQSTPAIGGTMGSTGMTLTTLVAGSTVVTPMTEA 633

Query: 547 TSRPKSCSS 573
           T    S  S
Sbjct: 634 TGAFLSAGS 642


>U00066-10|AAA50744.2|  106|Caenorhabditis elegans Hypothetical
           protein R12B2.6 protein.
          Length = 106

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 300 PVSEHVDAAGRAGKHGR 350
           PV+E   A GRAGKHG+
Sbjct: 6   PVAEAAAAGGRAGKHGK 22


>U00047-2|AAA50688.2|  275|Caenorhabditis elegans Abnormal cell
           lineage protein 37 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +3

Query: 288 HPHEPVS----EHVDAAGRAGKHGRPPGQPHARP-DRSHADLDDGPERS 419
           HP E +     ++  A    G+ GRPPG+P   P   S   L + P ++
Sbjct: 74  HPSEIIGVLPEDYTRADEEPGRQGRPPGRPRKMPRHESSTSLMESPRKT 122


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
 Frame = +3

Query: 225 PLCP----ISLCNKPNDERARTDTKHPHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHA 392
           P+CP    +     PN  +A    +   +P  E  D A      GRPP      P++   
Sbjct: 260 PICPQTPALQRGRAPNTLKAGDHERKEKKPKKEERDPAAPPRPRGRPPK----TPEQKAL 315

Query: 393 DLDDGPERSRADTGQ 437
           D  +   R RA+ G+
Sbjct: 316 DKKEKQMRKRAEAGR 330


>Z81125-6|CAI79225.1|  234|Caenorhabditis elegans Hypothetical
           protein T22A3.3b protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +3

Query: 348 RPPGQPHARPDRSHADLDDGPERSRADTGQRTSTFVSLNSQHVFLCGTNCRLQPDFLDNM 527
           + P QP     R++     G  R    T +  +  V   +    L   N +    ++D M
Sbjct: 81  KQPVQPSTSTSRNNVSQISGSSRLNGST-RHVAPIVPKVAMPSELSYANVKRSSGYVDYM 139

Query: 528 PSTDASNITAQELLKSIDNS 587
           P+T  SN+T+     S+  S
Sbjct: 140 PTTYNSNVTSNSSAASVPMS 159


>Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical
           protein T22A3.3a protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +3

Query: 348 RPPGQPHARPDRSHADLDDGPERSRADTGQRTSTFVSLNSQHVFLCGTNCRLQPDFLDNM 527
           + P QP     R++     G  R    T +  +  V   +    L   N +    ++D M
Sbjct: 245 KQPVQPSTSTSRNNVSQISGSSRLNGST-RHVAPIVPKVAMPSELSYANVKRSSGYVDYM 303

Query: 528 PSTDASNITAQELLKSIDNS 587
           P+T  SN+T+     S+  S
Sbjct: 304 PTTYNSNVTSNSSAASVPMS 323


>AF408760-1|AAO27839.1|  318|Caenorhabditis elegans unknown protein
           protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +3

Query: 348 RPPGQPHARPDRSHADLDDGPERSRADTGQRTSTFVSLNSQHVFLCGTNCRLQPDFLDNM 527
           + P QP     R++     G  R    T +  +  V   +    L   N +    ++D M
Sbjct: 165 KQPVQPSTSTSRNNVSQISGSSRLNGST-RHVAPIVPKVAMPSELSYANVKRSSGYVDYM 223

Query: 528 PSTDASNITAQELLKSIDNS 587
           P+T  SN+T+     S+  S
Sbjct: 224 PTTYNSNVTSNSSAASVPMS 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,864,134
Number of Sequences: 27780
Number of extensions: 244359
Number of successful extensions: 954
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)