Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30181
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42950.1 68418.m05236 GYF domain-containing protein contains ...    33   0.16 
At5g52730.1 68418.m06545 heavy-metal-associated domain-containin...    31   0.83 
At4g12610.1 68417.m01987 transcription initiation factor IIF alp...    30   1.4  
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina...    29   2.5  
At4g38550.1 68417.m05458 expressed protein                             29   3.3  
At1g60640.1 68414.m06826 expressed protein                             29   3.3  
At2g25010.1 68415.m02990 expressed protein                             28   4.4  
At5g51150.1 68418.m06342 expressed protein similar to unknown pr...    27   7.7  

>At5g42950.1 68418.m05236 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1714

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +3

Query: 210 LQVNSPLCPISLCNKPNDERARTDTKHPHEPVSEHVDAAGRAGKHGRPP---GQP-HARP 377
           L    P  P++LC   +DE    D     + VS       + G  GR P    QP   RP
Sbjct: 328 LTSEEPTDPLALCAPSSDEVNVLDAIEKGKIVSSGAPQTSKDGPTGRNPVEFSQPRRIRP 387

Query: 378 DRSHADLDDGPERSRADTGQ 437
             S  D+  G E S+ ++G+
Sbjct: 388 AGSREDMTFGAEESKDESGE 407


>At5g52730.1 68418.m06545 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 185

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +3

Query: 252 KPNDERARTDTKHP-HEPVSEHVDAAGRAGK---HGRPPGQPHARPDRSHADLDDG 407
           +P   R+R   + P  EP       A R  +   H RP   PHARP R   +  DG
Sbjct: 127 EPEQNRSRVTRREPSREPEPNRAPLARRESRPRTHSRP-SIPHARPSRVRGENSDG 181


>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
           subunit (TFIIF-alpha) family protein low similarity to
           SP|Q05913 Transcription initiation factor IIF, alpha
           subunit (TFIIF-alpha) (Transcription factor 5, large
           chain) (TF5A) {Drosophila melanogaster}; contains Pfam
           profile PF05793: Transcription initiation factor IIF,
           alpha subunit (TFIIF-alpha)
          Length = 543

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 276 TDTKHPHEPVSEHVD-AAGRAGKHGRPPGQPHARPDRSHADLDDGPERSRADTGQR 440
           T++K       E VD A  +    G P G P A+P +    L+DG  +  + + Q+
Sbjct: 377 TNSKQKEAAKEEPVDNAPAKPAPSGPPRGTPPAKPSKGKRKLNDGDSKKPSSSVQK 432


>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1791

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 434 PTDLNIRFPQFTTRLSLRDKLQTSTGLPRQHAFH*REQHHGPRAAQVYRQFVFERHPIS 610
           PT L+   PQ    + + + L T+T L  Q          G +A ++   FVF RH IS
Sbjct: 699 PTMLSCAEPQRANSVPVSELLSTTTNLSIQKDIPPIPYGSGWQAREINPSFVFSRHNIS 757


>At4g38550.1 68417.m05458 expressed protein
          Length = 612

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 333 AGKHGRPPGQPHARPD--RSHADLDD 404
           A  H  PP QP+  PD  RSH D +D
Sbjct: 285 AASHSPPPPQPYRTPDHRRSHQDNED 310


>At1g60640.1 68414.m06826 expressed protein
          Length = 340

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 276 TDTKHPHEPVSEHVDAAGRAGKHGRPPGQPHARPDRSHADLDDGPERSRADTGQRTSTFV 455
           +D +      SE  D+     + G   G   +      AD+DDG + S AD    T   +
Sbjct: 27  SDPETEESEQSEEEDSVAEVSEDGDDSGDDESPAAGEDADVDDGDDNSDADDYGGTLEKM 86

Query: 456 SLN 464
           S+N
Sbjct: 87  SMN 89


>At2g25010.1 68415.m02990 expressed protein
          Length = 509

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 388 WDRSGR-AWGCPGGRPCFPARPAASTCSETGSCGCLVSVLARSSFGL 251
           +D++GR AWG       + A   AS  S++  CGCL  +   S F L
Sbjct: 208 FDQAGRYAWGAAALACLYRALGNASLKSQSNICGCLTLLQCWSYFHL 254


>At5g51150.1 68418.m06342 expressed protein similar to unknown
           protein (gb|AAD46013.1)
          Length = 531

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 531 KACCRGSPVEVCSLS 487
           + CCRG P++V SLS
Sbjct: 262 RECCRGGPIDVASLS 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,720
Number of Sequences: 28952
Number of extensions: 221471
Number of successful extensions: 785
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)