Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30180X
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   0.38 
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   1.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   2.7  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   4.7  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    25   4.7  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    24   6.2  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    24   6.2  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    24   8.2  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.3 bits (60), Expect = 0.38
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 248 EFSIYLPPQADGGDVKLPLLYY 313
           +F+ Y+PP+ +GGD+ +P  +Y
Sbjct: 19  QFNGYVPPEQNGGDIVVPKDFY 40


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 233 IKMPNEFSIYLPPQAD 280
           IK P E SIYLPP  D
Sbjct: 557 IKYPKELSIYLPPILD 572


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 174  ESSNKIFGGYQKVYSHASSGL--KCQMNFLSISPLRQTGVM 290
            ESSN +F   ++  SHAS  L  + Q+ FL    L+   V+
Sbjct: 995  ESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLKTKNVV 1035


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 183 NKIFGGYQKVYSHASSGLKCQMNFLSISPLR 275
           +K+  G Q  Y HA  G++ Q+N L    LR
Sbjct: 365 SKLLDGIQDNYIHAQPGIRRQVNNLRELTLR 395


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 187 KFLVVIKKCILMHH 228
           KF+V++  CILMH+
Sbjct: 127 KFIVILDLCILMHY 140


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 315 K*YRSGNFTSPPSA*GGR*IENSFG 241
           K + +GN+  P S    + IENSFG
Sbjct: 202 KAFLTGNYEQPISGEASKLIENSFG 226


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 149 FLMSLRKNYTHNYLVTTIYHGT 84
           FL+ L+ ++TH YL    Y+GT
Sbjct: 186 FLL-LKGSFTHEYLTIDFYNGT 206


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = -1

Query: 354  LVMKFCSLQVRPDK*YRSGNFTSPPSA*GGR*IENSFGILIQMMHENTLFDNHQKFYWTI 175
            ++  F  L  +  K YR  N TSP     G  IE+  G+   +++E  +   H+     I
Sbjct: 997  VIPSFGGLSHKEWKEYRGENETSPSDLIDGSLIESILGLREPILNE-IVNGGHEGTKLDI 1055

Query: 174  LIASCPCLISDEPPEKLYP 118
             +     +I  E  EKL+P
Sbjct: 1056 SVQDLKSII--ENLEKLHP 1072


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,421
Number of Sequences: 5004
Number of extensions: 32000
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)