Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30180X
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0129 + 41243686-41243853,41243936-41244053,41245485-412455...    48   3e-06
10_01_0189 + 2097918-2098191,2101711-2102747                           31   0.21 
04_01_0575 - 7454421-7455707                                           29   0.83 
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439...    28   2.5  
01_01_0704 + 5434331-5434337,5434480-5434519,5435062-5435134,543...    27   3.4  

>01_07_0129 +
           41243686-41243853,41243936-41244053,41245485-41245532,
           41245756-41245787
          Length = 121

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 21/39 (53%), Positives = 31/39 (79%)
 Frame = +2

Query: 242 PNEFSIYLPPQADGGDVKLPLLYYLSGLTCSEQNFITKS 358
           P  FS++LPP +   D  LP+LY+LSGLTC+++NF+TK+
Sbjct: 40  PMTFSVFLPP-SPASD--LPVLYWLSGLTCNDENFVTKA 75



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 162 SLQLESSNKIFGGYQKVYSHASSGLKCQMNFLSISP 269
           +L+  S  K+FGG+   + H S+ L C M F    P
Sbjct: 13  ALEQMSRTKMFGGHNLRFRHHSATLGCPMTFSVFLP 48


>10_01_0189 + 2097918-2098191,2101711-2102747
          Length = 436

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 222 HENTLFDNHQKFYWTILIASCPCLISDEPPEKLYPQLSCNHYLPRH*FP 76
           H + LFD     ++T  I S P +I+   P+   PQL     L  H FP
Sbjct: 339 HPHKLFDQGHPAHFTGYILSPPTIITPNVPQNDLPQLRFGDLLTGHIFP 387


>04_01_0575 - 7454421-7455707
          Length = 428

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 260 YLPPQAD-GGDVKLPLLYYLSGLT 328
           +LP  AD GGD  LPLL YL+ LT
Sbjct: 50  HLPANADDGGDTPLPLLPYLAHLT 73


>07_03_0669 -
           20542481-20542489,20543212-20543872,20543899-20543983,
           20545311-20546625
          Length = 689

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 257 IYLPPQADGGDVKLP-LLYYLSGLTCSEQNF 346
           ++LP  ADGG   LP ++Y+  G  C+E  F
Sbjct: 69  LFLPSGADGGRRLLPVVVYFHGGCFCTESAF 99


>01_01_0704 +
           5434331-5434337,5434480-5434519,5435062-5435134,
           5435352-5435468
          Length = 78

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 258 IENSFGILIQMMHENTLFDNHQKFYWTILIAS 163
           +EN  GI +Q +H N++     KF  ++L  S
Sbjct: 3   VENIVGISLQDLHRNSIIGGFNKFVTSVLTIS 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,176,223
Number of Sequences: 37544
Number of extensions: 200920
Number of successful extensions: 372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)