Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30180X
(360 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768... 49 8e-07
At4g25870.1 68417.m03720 expressed protein contains Pfam profile... 28 2.1
At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS cla... 28 2.1
At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS cla... 28 2.1
At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS cla... 28 2.1
At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containi... 28 2.1
At1g03890.1 68414.m00373 cupin family protein similar to Arabido... 27 2.8
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi... 26 8.7
>At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768
Esterase D (EC 3.1.1.1) {Homo sapiens}; contains Pfam
profile: PF00756 putative esterase
Length = 284
Score = 49.2 bits (112), Expect = 8e-07
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +2
Query: 251 FSIYLPPQADGGDVKLPLLYYLSGLTCSEQNFITKS 358
FSIY PP A K P+LY+LSGLTC+++NFI KS
Sbjct: 34 FSIYFPPSASSSH-KSPVLYWLSGLTCTDENFIIKS 68
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 180 SNKIFGGYQKVYSHASSGLKCQMNF 254
S K+F GY K Y H S L C M F
Sbjct: 10 STKMFDGYNKRYKHFSETLGCSMTF 34
>At4g25870.1 68417.m03720 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 389
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 114 LSCNHYLPRH*FPSACHGSY 55
L C H P+H S+CHG Y
Sbjct: 34 LICTHMYPKHGKSSSCHGLY 53
>At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 801
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -3
Query: 274 LRGEIDRKFIWHFNPDDA*EYTF**PPKILLDDSNCKLSMFDF 146
LR E+DRKFI FN D+ E + P++LL N ++S+ F
Sbjct: 28 LRKELDRKFINTFN-DNRIERSRKITPELLLAIENSRISLVVF 69
>At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 796
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -3
Query: 274 LRGEIDRKFIWHFNPDDA*EYTF**PPKILLDDSNCKLSMFDF 146
LR E+DRKFI FN D+ E + P++LL N ++S+ F
Sbjct: 28 LRKELDRKFINTFN-DNRIERSRKITPELLLAIENSRISLVVF 69
>At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 520
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -3
Query: 274 LRGEIDRKFIWHFNPDDA*EYTF**PPKILLDDSNCKLSMFDF 146
LR E+DRKFI FN D+ E + P++LL N ++S+ F
Sbjct: 28 LRKELDRKFINTFN-DNRIERSRKITPELLLAIENSRISLVVF 69
>At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 572
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 201 NHQKFYWTILIASCPCLI--SDEPPEKLYPQLSCNHYLPR 88
++ +YW SC CL+ +DE + L+ QL N + PR
Sbjct: 472 SNDDWYWLYAAVSCKCLLVTNDEMRDHLF-QLLGNSFFPR 510
>At1g03890.1 68414.m00373 cupin family protein similar to
Arabidopsis thaliana 12S seed storage proteins SP|P15455
[gi|808937] and SP|P15456, Brassica napus cruciferin
storage protein, gi|762919, and others; contains Pfam
profile PF00190 Cupin; Location of ESTs YAY049-3' end,
gb|Z26364 and YAY049-5' end, gb|Z26363
Length = 451
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 129 FPEAHQKSNMDSLQLESSNKIFGGYQKVYSHASSGLKC 242
FP A S ++SL + K G +V+ H S L+C
Sbjct: 32 FPNACHFSQINSLAPAQATKFEAGQMEVWDHMSPELRC 69
>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 620
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 207 FDNHQKFYWTILIASCPCLISDEPPEK--LYPQLSCN 103
FD F W ++I C SDEP LY ++ C+
Sbjct: 75 FDRPDTFLWNLMIRGFSC--SDEPERSLLLYQRMLCS 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,198,189
Number of Sequences: 28952
Number of extensions: 164141
Number of successful extensions: 349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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