Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30178
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    66   3e-11
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    33   0.26 
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109...    29   2.4  
01_01_1163 + 9258427-9258451,9258581-9258681,9258890-9258967,925...    29   2.4  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    29   4.2  
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    28   5.6  
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534...    28   7.4  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    27   9.8  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 35/81 (43%), Positives = 49/81 (60%)
 Frame = +3

Query: 249 QRYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYR 428
           +RY+K L AKL+    ++ E FK N+    K +LG+ K+LQFF GESM  DG +    Y+
Sbjct: 92  KRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK 148

Query: 429 DFDGTQIPIMMFFKHGLEEEK 491
             DG   P  ++F HGL+E K
Sbjct: 149 --DGATDPTFLYFSHGLKEVK 167



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
 Frame = +1

Query: 1   ITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGTDSAVES 171
           +TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE    DEG D     
Sbjct: 8   LTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVK 66

Query: 172 GVDIVLNHRLVETYAFGDKKSYTLYLKDI*KN 267
            VDIV   RL E   F DKK +  ++K   KN
Sbjct: 67  VVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKN 97


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -1

Query: 422 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 288
           FHH  H   ++  PSK+L    ++L+     FH F ++C++Y  + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292


>02_05_1057 +
           33809982-33810366,33810436-33810687,33810727-33810926,
           33811021-33811122
          Length = 312

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +1

Query: 16  MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLN 192
           +FS       VDE I +E+    +    G+I ++GF         G D+AVE  ++ V  
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV-- 158

Query: 193 HRLVETYAFGDKKS--YTLYLKD 255
            R+ E      K S  Y L L D
Sbjct: 159 -RVSEVRGIAGKASGTYVLVLLD 180


>01_01_1163 +
           9258427-9258451,9258581-9258681,9258890-9258967,
           9259625-9259765,9260263-9260329,9261039-9261193,
           9261285-9261386,9262022-9262141,9262688-9262855
          Length = 318

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 343 SFITLFMFVLNTSTWSGAFSSNFATNFFIYL*GTMCRISCHRRRMFRLACG 191
           SFI  F+ +  TS +   F  NF+   FIYL G    +S  +R +    CG
Sbjct: 156 SFIPFFLDIPVTSRFR-IFGVNFSDKSFIYLAGLQLLLSSGKRSLIPGICG 205


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 85  TRAQGDIQIEGFNPSAEEADEGTDSAVESGVD--IVLNHRLVETYAFGD 225
           TR+   +Q++GF PSA ++ +G+ + V S  +  IV   +L +T   G+
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGN 875


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 103 IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 231
           + I   N S EE +E  ++A    VD+ LN   +E   +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752


>09_04_0741 -
           19852339-19852497,19853185-19853246,19853352-19853415,
           19853561-19853614,19853744-19853890,19854460-19854564,
           19854651-19854794,19854987-19855093,19855613-19855712,
           19855804-19855833,19856492-19856608,19856705-19856828,
           19857143-19857189,19857272-19857400,19857777-19857852,
           19858446-19858543,19858630-19858671,19858811-19859044
          Length = 612

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 447 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 361
           F YH  +Y+ SW  C H N ++ Q +  +P
Sbjct: 264 FLYHGRMYVSSWHICFHSNVFSKQIKVMLP 293


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 475 PCL-KNIMIGICVPSKSLYSIMATMPSQSMDSPV 377
           PCL K+   GI  P+K    ++ TMPS S  + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,334,369
Number of Sequences: 37544
Number of extensions: 310115
Number of successful extensions: 788
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)