Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30178
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    64   1e-10
At3g05540.1 68416.m00607 translationally controlled tumor family...    49   2e-06
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    34   0.071
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi...    33   0.22 
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   0.66 
At3g56740.1 68416.m06311 ubiquitin-associated (UBA)/TS-N domain-...    30   1.2  
At5g58220.1 68418.m07289 expressed protein                             30   1.5  
At2g41160.1 68415.m05084 ubiquitin-associated (UBA)/TS-N domain-...    29   2.7  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    28   6.2  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   8.2  
At4g16150.1 68417.m02450 calmodulin-binding protein similar to a...    27   8.2  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
 Frame = +1

Query: 1   ITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGTDSAVES 171
           +TGDE+ SD++  K ++  +++EV G+ VT    D+ I G NPSAEE   DEG D + + 
Sbjct: 8   LTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEGVDDSTQK 66

Query: 172 GVDIVLNHRLVETYAFGDKKSYTLYLK 252
            VDIV   RL E   + DKK +  Y+K
Sbjct: 67  VVDIVDTFRLQEQPTY-DKKGFIAYIK 92



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 30/81 (37%), Positives = 44/81 (54%)
 Frame = +3

Query: 249 QRYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYR 428
           ++Y+K L  KL E+  DQ  VFK  +    K +L R  + QFF GE M  D  +    Y+
Sbjct: 92  KKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK 148

Query: 429 DFDGTQIPIMMFFKHGLEEEK 491
             +G+  P  ++F HGL+E K
Sbjct: 149 --EGSTNPTFLYFAHGLKEVK 167


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = +3

Query: 249 QRYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDC-DGMVAMMEY 425
           +RY+K+L  KL+    +  E+FK ++    K ++ + K+ QFF GESM+  +G +    Y
Sbjct: 79  KRYIKQLSPKLDS---ENQELFKKHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAYY 135

Query: 426 RDFDGTQIPIMMFFKHGLEEEK 491
           R  +G   P  ++  +GL+E K
Sbjct: 136 R--EGATDPTFLYLAYGLKEIK 155



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
 Frame = +1

Query: 1   ITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGTDSAVESG 174
           +TGDE+ SD++  K ++       G L        ++EG NPS EE   DEG D      
Sbjct: 8   LTGDELLSDSFPYKEIEN------GMLW-------EVEGKNPSGEEGGEDEGVDDQAVKV 54

Query: 175 VDIVLNHRLVETYAFGDKKSYTLYLK 252
           VDI+   RL E  +F DKK + +++K
Sbjct: 55  VDIIDTFRLQEQPSF-DKKQFVMFMK 79


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 7   GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 174
           G+   S   K +++D V+  +T  G  +T  +G+   EGF P+AEEAD+G  S +  G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292


>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 603

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +3

Query: 381 GESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF*MLDKNNSIIPNWRLDTFVFLF 560
           G   D   +   M Y+D       I+ +  HG  E+   M ++  S   N + D   FL 
Sbjct: 279 GSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRS--ENVQPDEITFLG 336

Query: 561 IYQSCPHPGR 590
           +  +C H GR
Sbjct: 337 LLNACSHTGR 346


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 225 QEILHIVPQRYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 395
           +E+L  +    M+  + KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 217 EEMLSHMKSDKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At3g56740.1 68416.m06311 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 293

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 343 SFITLFMFVLNTSTWSGAFSSNFATNFFIYL*GTMCRISCHRRRMFRLACG 191
           SFI  ++ +   ST    F  NF+   FIYL G    +S  +R +F   CG
Sbjct: 129 SFIPFYLDI-PVSTRFRVFGVNFSDKSFIYLAGVQLLLSSWKRSIFPGICG 178


>At5g58220.1 68418.m07289 expressed protein
          Length = 324

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 228 EILHIVPQRYMKKLVAKLEEKAPDQVEVFKTNMNKVMKD 344
           E+LH + +RY  + + +LE  A +Q+++ +  M K+  D
Sbjct: 122 EMLHALKERYENRPIVELEIAAMEQMKITELRMAKLFSD 160


>At2g41160.1 68415.m05084 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 287

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 343 SFITLFMFVLNTSTWSGAFSSNFATNFFIYL*GTMCRISCHRRRMFRLACG 191
           SF+  F+ +  T  + G    +F+   FIYL G    +S  +R +F   CG
Sbjct: 129 SFVPFFLDIPVTKRF-GVLGVHFSDKSFIYLAGVQLLLSSWKRSIFTGICG 178


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 447 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 361
           F YH  +Y+ +W  C H N ++ Q +  VP
Sbjct: 255 FLYHGRMYVSAWHICFHSNVFSKQMKVVVP 284


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 324 MNKVMKDILGRFKELQFFTGE---SMDCDGM 407
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


>At4g16150.1 68417.m02450 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 906

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 464 FQTWSRRREILNVR*K 511
           FQTW  RRE LN+R K
Sbjct: 770 FQTWKMRREFLNMRKK 785


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,308
Number of Sequences: 28952
Number of extensions: 262363
Number of successful extensions: 743
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)